FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1849, 365 aa 1>>>pF1KE1849 365 - 365 aa - 365 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2422+/-0.000295; mu= 17.8725+/- 0.018 mean_var=77.9863+/-15.889, 0's: 0 Z-trim(119.2): 7 B-trim: 581 in 2/51 Lambda= 0.145233 statistics sampled from 33004 (33011) to 33004 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.753), E-opt: 0.2 (0.387), width: 16 Scan time: 7.000 The best scores are: opt bits E(85289) XP_005248007 (OMIM: 614309) PREDICTED: probable tR ( 516) 2593 552.4 8.1e-157 XP_011511711 (OMIM: 614309) PREDICTED: probable tR ( 516) 2593 552.4 8.1e-157 XP_011511710 (OMIM: 614309) PREDICTED: probable tR ( 528) 2593 552.4 8.3e-157 NP_689757 (OMIM: 614309) probable tRNA (uracil-O(2 ( 757) 2593 552.6 1.1e-156 XP_011511709 (OMIM: 614309) PREDICTED: probable tR ( 713) 2028 434.2 4.5e-121 XP_011511708 (OMIM: 614309) PREDICTED: probable tR ( 743) 1782 382.6 1.5e-105 >>XP_005248007 (OMIM: 614309) PREDICTED: probable tRNA ( (516 aa) initn: 2593 init1: 2593 opt: 2593 Z-score: 2936.3 bits: 552.4 E(85289): 8.1e-157 Smith-Waterman score: 2593; 100.0% identity (100.0% similar) in 365 aa overlap (1-365:152-516) 10 20 30 pF1KE1 MYGPQTQLEEDAITPNDKTLFPDVDWLIGN :::::::::::::::::::::::::::::: XP_005 GCGNGLLVHILSSEGHPGRGIDVRRRKIWDMYGPQTQLEEDAITPNDKTLFPDVDWLIGN 130 140 150 160 170 180 40 50 60 70 80 90 pF1KE1 HSDELTPWIPVIAARSSYNCRFFVLPCCFFDFIGRYSRRQSKKTQYREYLDFIKEVGFTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 HSDELTPWIPVIAARSSYNCRFFVLPCCFFDFIGRYSRRQSKKTQYREYLDFIKEVGFTC 190 200 210 220 230 240 100 110 120 130 140 150 pF1KE1 GFHVDEDCLRIPSTKRVCLVGKSRTYPSSREASVDEKRTQYIKSRRGCPVSPPGWELSPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GFHVDEDCLRIPSTKRVCLVGKSRTYPSSREASVDEKRTQYIKSRRGCPVSPPGWELSPS 250 260 270 280 290 300 160 170 180 190 200 210 pF1KE1 PRWVAAGSAGHCDGQQALDARVGCVTRAWAAEHGAGPQAEGPWLPGFHPREKAERVRNCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 PRWVAAGSAGHCDGQQALDARVGCVTRAWAAEHGAGPQAEGPWLPGFHPREKAERVRNCA 310 320 330 340 350 360 220 230 240 250 260 270 pF1KE1 ALPRDFIDQVVLQVANLLLGGKQLNTRSSRNGSLKTWNGGESLSLAEVANELDTETLRRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 ALPRDFIDQVVLQVANLLLGGKQLNTRSSRNGSLKTWNGGESLSLAEVANELDTETLRRL 370 380 390 400 410 420 280 290 300 310 320 330 pF1KE1 KRECGGLQTLLRNSHQVFQVVNGRVHIRDWREETLWKTKQPEAKQRLLSEACKTRLCWFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 KRECGGLQTLLRNSHQVFQVVNGRVHIRDWREETLWKTKQPEAKQRLLSEACKTRLCWFF 430 440 450 460 470 480 340 350 360 pF1KE1 MHHPDGCALSTDCCPFAHGPAELRPPRTTPRKKIS ::::::::::::::::::::::::::::::::::: XP_005 MHHPDGCALSTDCCPFAHGPAELRPPRTTPRKKIS 490 500 510 >>XP_011511711 (OMIM: 614309) PREDICTED: probable tRNA ( (516 aa) initn: 2593 init1: 2593 opt: 2593 Z-score: 2936.3 bits: 552.4 E(85289): 8.1e-157 Smith-Waterman score: 2593; 100.0% identity (100.0% similar) in 365 aa overlap (1-365:152-516) 10 20 30 pF1KE1 MYGPQTQLEEDAITPNDKTLFPDVDWLIGN :::::::::::::::::::::::::::::: XP_011 GCGNGLLVHILSSEGHPGRGIDVRRRKIWDMYGPQTQLEEDAITPNDKTLFPDVDWLIGN 130 140 150 160 170 180 40 50 60 70 80 90 pF1KE1 HSDELTPWIPVIAARSSYNCRFFVLPCCFFDFIGRYSRRQSKKTQYREYLDFIKEVGFTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 HSDELTPWIPVIAARSSYNCRFFVLPCCFFDFIGRYSRRQSKKTQYREYLDFIKEVGFTC 190 200 210 220 230 240 100 110 120 130 140 150 pF1KE1 GFHVDEDCLRIPSTKRVCLVGKSRTYPSSREASVDEKRTQYIKSRRGCPVSPPGWELSPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GFHVDEDCLRIPSTKRVCLVGKSRTYPSSREASVDEKRTQYIKSRRGCPVSPPGWELSPS 250 260 270 280 290 300 160 170 180 190 200 210 pF1KE1 PRWVAAGSAGHCDGQQALDARVGCVTRAWAAEHGAGPQAEGPWLPGFHPREKAERVRNCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PRWVAAGSAGHCDGQQALDARVGCVTRAWAAEHGAGPQAEGPWLPGFHPREKAERVRNCA 310 320 330 340 350 360 220 230 240 250 260 270 pF1KE1 ALPRDFIDQVVLQVANLLLGGKQLNTRSSRNGSLKTWNGGESLSLAEVANELDTETLRRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ALPRDFIDQVVLQVANLLLGGKQLNTRSSRNGSLKTWNGGESLSLAEVANELDTETLRRL 370 380 390 400 410 420 280 290 300 310 320 330 pF1KE1 KRECGGLQTLLRNSHQVFQVVNGRVHIRDWREETLWKTKQPEAKQRLLSEACKTRLCWFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KRECGGLQTLLRNSHQVFQVVNGRVHIRDWREETLWKTKQPEAKQRLLSEACKTRLCWFF 430 440 450 460 470 480 340 350 360 pF1KE1 MHHPDGCALSTDCCPFAHGPAELRPPRTTPRKKIS ::::::::::::::::::::::::::::::::::: XP_011 MHHPDGCALSTDCCPFAHGPAELRPPRTTPRKKIS 490 500 510 >>XP_011511710 (OMIM: 614309) PREDICTED: probable tRNA ( (528 aa) initn: 2593 init1: 2593 opt: 2593 Z-score: 2936.2 bits: 552.4 E(85289): 8.3e-157 Smith-Waterman score: 2593; 100.0% identity (100.0% similar) in 365 aa overlap (1-365:164-528) 10 20 30 pF1KE1 MYGPQTQLEEDAITPNDKTLFPDVDWLIGN :::::::::::::::::::::::::::::: XP_011 GCGNGLLVHILSSEGHPGRGIDVRRRKIWDMYGPQTQLEEDAITPNDKTLFPDVDWLIGN 140 150 160 170 180 190 40 50 60 70 80 90 pF1KE1 HSDELTPWIPVIAARSSYNCRFFVLPCCFFDFIGRYSRRQSKKTQYREYLDFIKEVGFTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 HSDELTPWIPVIAARSSYNCRFFVLPCCFFDFIGRYSRRQSKKTQYREYLDFIKEVGFTC 200 210 220 230 240 250 100 110 120 130 140 150 pF1KE1 GFHVDEDCLRIPSTKRVCLVGKSRTYPSSREASVDEKRTQYIKSRRGCPVSPPGWELSPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GFHVDEDCLRIPSTKRVCLVGKSRTYPSSREASVDEKRTQYIKSRRGCPVSPPGWELSPS 260 270 280 290 300 310 160 170 180 190 200 210 pF1KE1 PRWVAAGSAGHCDGQQALDARVGCVTRAWAAEHGAGPQAEGPWLPGFHPREKAERVRNCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PRWVAAGSAGHCDGQQALDARVGCVTRAWAAEHGAGPQAEGPWLPGFHPREKAERVRNCA 320 330 340 350 360 370 220 230 240 250 260 270 pF1KE1 ALPRDFIDQVVLQVANLLLGGKQLNTRSSRNGSLKTWNGGESLSLAEVANELDTETLRRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ALPRDFIDQVVLQVANLLLGGKQLNTRSSRNGSLKTWNGGESLSLAEVANELDTETLRRL 380 390 400 410 420 430 280 290 300 310 320 330 pF1KE1 KRECGGLQTLLRNSHQVFQVVNGRVHIRDWREETLWKTKQPEAKQRLLSEACKTRLCWFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KRECGGLQTLLRNSHQVFQVVNGRVHIRDWREETLWKTKQPEAKQRLLSEACKTRLCWFF 440 450 460 470 480 490 340 350 360 pF1KE1 MHHPDGCALSTDCCPFAHGPAELRPPRTTPRKKIS ::::::::::::::::::::::::::::::::::: XP_011 MHHPDGCALSTDCCPFAHGPAELRPPRTTPRKKIS 500 510 520 >>NP_689757 (OMIM: 614309) probable tRNA (uracil-O(2)-)- (757 aa) initn: 2593 init1: 2593 opt: 2593 Z-score: 2934.1 bits: 552.6 E(85289): 1.1e-156 Smith-Waterman score: 2593; 100.0% identity (100.0% similar) in 365 aa overlap (1-365:393-757) 10 20 30 pF1KE1 MYGPQTQLEEDAITPNDKTLFPDVDWLIGN :::::::::::::::::::::::::::::: NP_689 GCGNGLLVHILSSEGHPGRGIDVRRRKIWDMYGPQTQLEEDAITPNDKTLFPDVDWLIGN 370 380 390 400 410 420 40 50 60 70 80 90 pF1KE1 HSDELTPWIPVIAARSSYNCRFFVLPCCFFDFIGRYSRRQSKKTQYREYLDFIKEVGFTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_689 HSDELTPWIPVIAARSSYNCRFFVLPCCFFDFIGRYSRRQSKKTQYREYLDFIKEVGFTC 430 440 450 460 470 480 100 110 120 130 140 150 pF1KE1 GFHVDEDCLRIPSTKRVCLVGKSRTYPSSREASVDEKRTQYIKSRRGCPVSPPGWELSPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_689 GFHVDEDCLRIPSTKRVCLVGKSRTYPSSREASVDEKRTQYIKSRRGCPVSPPGWELSPS 490 500 510 520 530 540 160 170 180 190 200 210 pF1KE1 PRWVAAGSAGHCDGQQALDARVGCVTRAWAAEHGAGPQAEGPWLPGFHPREKAERVRNCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_689 PRWVAAGSAGHCDGQQALDARVGCVTRAWAAEHGAGPQAEGPWLPGFHPREKAERVRNCA 550 560 570 580 590 600 220 230 240 250 260 270 pF1KE1 ALPRDFIDQVVLQVANLLLGGKQLNTRSSRNGSLKTWNGGESLSLAEVANELDTETLRRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_689 ALPRDFIDQVVLQVANLLLGGKQLNTRSSRNGSLKTWNGGESLSLAEVANELDTETLRRL 610 620 630 640 650 660 280 290 300 310 320 330 pF1KE1 KRECGGLQTLLRNSHQVFQVVNGRVHIRDWREETLWKTKQPEAKQRLLSEACKTRLCWFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_689 KRECGGLQTLLRNSHQVFQVVNGRVHIRDWREETLWKTKQPEAKQRLLSEACKTRLCWFF 670 680 690 700 710 720 340 350 360 pF1KE1 MHHPDGCALSTDCCPFAHGPAELRPPRTTPRKKIS ::::::::::::::::::::::::::::::::::: NP_689 MHHPDGCALSTDCCPFAHGPAELRPPRTTPRKKIS 730 740 750 >>XP_011511709 (OMIM: 614309) PREDICTED: probable tRNA ( (713 aa) initn: 2026 init1: 2026 opt: 2028 Z-score: 2294.6 bits: 434.2 E(85289): 4.5e-121 Smith-Waterman score: 2028; 97.0% identity (98.7% similar) in 300 aa overlap (1-297:393-692) 10 20 30 pF1KE1 MYGPQTQLEEDAITPNDKTLFPDVDWLIGN :::::::::::::::::::::::::::::: XP_011 GCGNGLLVHILSSEGHPGRGIDVRRRKIWDMYGPQTQLEEDAITPNDKTLFPDVDWLIGN 370 380 390 400 410 420 40 50 60 70 80 90 pF1KE1 HSDELTPWIPVIAARSSYNCRFFVLPCCFFDFIGRYSRRQSKKTQYREYLDFIKEVGFTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 HSDELTPWIPVIAARSSYNCRFFVLPCCFFDFIGRYSRRQSKKTQYREYLDFIKEVGFTC 430 440 450 460 470 480 100 110 120 130 140 150 pF1KE1 GFHVDEDCLRIPSTKRVCLVGKSRTYPSSREASVDEKRTQYIKSRRGCPVSPPGWELSPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GFHVDEDCLRIPSTKRVCLVGKSRTYPSSREASVDEKRTQYIKSRRGCPVSPPGWELSPS 490 500 510 520 530 540 160 170 180 190 200 210 pF1KE1 PRWVAAGSAGHCDGQQALDARVGCVTRAWAAEHGAGPQAEGPWLPGFHPREKAERVRNCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PRWVAAGSAGHCDGQQALDARVGCVTRAWAAEHGAGPQAEGPWLPGFHPREKAERVRNCA 550 560 570 580 590 600 220 230 240 250 260 270 pF1KE1 ALPRDFIDQVVLQVANLLLGGKQLNTRSSRNGSLKTWNGGESLSLAEVANELDTETLRRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ALPRDFIDQVVLQVANLLLGGKQLNTRSSRNGSLKTWNGGESLSLAEVANELDTETLRRL 610 620 630 640 650 660 280 290 300 310 320 pF1KE1 KRECGGLQTLLRNSHQVFQ---VVNGRVHIRDWREETLWKTKQPEAKQRLLSEACKTRLC ::::::::::::::::::: ... :.:. XP_011 KRECGGLQTLLRNSHQVFQGLPLTSRRAHLPRPCLKTHPIPQSLPLEADSL 670 680 690 700 710 >>XP_011511708 (OMIM: 614309) PREDICTED: probable tRNA ( (743 aa) initn: 1782 init1: 1782 opt: 1782 Z-score: 2015.8 bits: 382.6 E(85289): 1.5e-105 Smith-Waterman score: 1782; 100.0% identity (100.0% similar) in 250 aa overlap (1-250:393-642) 10 20 30 pF1KE1 MYGPQTQLEEDAITPNDKTLFPDVDWLIGN :::::::::::::::::::::::::::::: XP_011 GCGNGLLVHILSSEGHPGRGIDVRRRKIWDMYGPQTQLEEDAITPNDKTLFPDVDWLIGN 370 380 390 400 410 420 40 50 60 70 80 90 pF1KE1 HSDELTPWIPVIAARSSYNCRFFVLPCCFFDFIGRYSRRQSKKTQYREYLDFIKEVGFTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 HSDELTPWIPVIAARSSYNCRFFVLPCCFFDFIGRYSRRQSKKTQYREYLDFIKEVGFTC 430 440 450 460 470 480 100 110 120 130 140 150 pF1KE1 GFHVDEDCLRIPSTKRVCLVGKSRTYPSSREASVDEKRTQYIKSRRGCPVSPPGWELSPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GFHVDEDCLRIPSTKRVCLVGKSRTYPSSREASVDEKRTQYIKSRRGCPVSPPGWELSPS 490 500 510 520 530 540 160 170 180 190 200 210 pF1KE1 PRWVAAGSAGHCDGQQALDARVGCVTRAWAAEHGAGPQAEGPWLPGFHPREKAERVRNCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PRWVAAGSAGHCDGQQALDARVGCVTRAWAAEHGAGPQAEGPWLPGFHPREKAERVRNCA 550 560 570 580 590 600 220 230 240 250 260 270 pF1KE1 ALPRDFIDQVVLQVANLLLGGKQLNTRSSRNGSLKTWNGGESLSLAEVANELDTETLRRL :::::::::::::::::::::::::::::::::::::::: XP_011 ALPRDFIDQVVLQVANLLLGGKQLNTRSSRNGSLKTWNGGVLGTGEEHGAPSPPGPSVGD 610 620 630 640 650 660 280 290 300 310 320 330 pF1KE1 KRECGGLQTLLRNSHQVFQVVNGRVHIRDWREETLWKTKQPEAKQRLLSEACKTRLCWFF XP_011 FCLAAHLRETLLLQALLSSPMNVGTKSYPFPSSSFVLLYHVYVGWDRAMEHRRPLQKSFE 670 680 690 700 710 720 365 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 17:33:36 2016 done: Sun Nov 6 17:33:37 2016 Total Scan time: 7.000 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]