Result of FASTA (ccds) for
pFN21AE2740
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2740, 504 aa
1>>>pF1KE2740 504 - 504 aa - 504 aa
Library: human.CCDS.faa
18921897 residues in 33420 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.8667+/-0.000784; mu= 3.9269+/- 0.047
mean_var=213.9887+/-43.450, 0's: 0 Z-trim(116.3): 9 B-trim: 229 in 2/50
Lambda= 0.087676
statistics sampled from 17116 (17124) to 17116 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.81), E-opt: 0.2 (0.512), width: 16
Scan time: 1.820
The best scores are: opt bits E(33420)
CCDS3370.2 DOK7 gene_id:285489|Hs109|chr4 ( 504) 3455 449.3 4.8e-126
CCDS87205.1 DOK7 gene_id:285489|Hs109|chr4 ( 464) 2194 289.8 4.6e-78
CCDS87206.1 DOK7 gene_id:285489|Hs109|chr4 ( 194) 1377 186.1 3e-47
CCDS54717.1 DOK7 gene_id:285489|Hs109|chr4 ( 255) 1189 162.5 5.4e-40
>>CCDS3370.2 DOK7 gene_id:285489|Hs109|chr4 (504 aa)
initn: 3455 init1: 3455 opt: 3455 Z-score: 2376.7 bits: 449.3 E(33420): 4.8e-126
Smith-Waterman score: 3455; 100.0% identity (100.0% similar) in 504 aa overlap (1-504:1-504)
10 20 30 40 50 60
pF1KE2 MTEAALVEGQVKLRDGKKWKSRWLVLRKPSPVADCLLMLVYKDKSERIKGLRERSSLTLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MTEAALVEGQVKLRDGKKWKSRWLVLRKPSPVADCLLMLVYKDKSERIKGLRERSSLTLE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 DICGLEPGLPYEGLVHTLAIVCLSQAIMLGFDSHEAMCAWDARIRYALGEVHRFHVTVAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DICGLEPGLPYEGLVHTLAIVCLSQAIMLGFDSHEAMCAWDARIRYALGEVHRFHVTVAP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 GTKLESGPATLHLCNDVLVLARDIPPAVTGQWKLSDLRRYGAVPSGFIFEGGTRCGYWAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GTKLESGPATLHLCNDVLVLARDIPPAVTGQWKLSDLRRYGAVPSGFIFEGGTRCGYWAG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 VFFLSSAEGEQISFLFDCIVRGISPTKGPFGLRPVLPDPSPPGPSTVEERVAQEALETLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VFFLSSAEGEQISFLFDCIVRGISPTKGPFGLRPVLPDPSPPGPSTVEERVAQEALETLQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 LEKRLSLLSHAGRPGSGGDDRSLSSSSSEASHLDVSASSRLTAWPEQSSSSASTSQEGPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LEKRLSLLSHAGRPGSGGDDRSLSSSSSEASHLDVSASSRLTAWPEQSSSSASTSQEGPR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE2 PAAAQAAGEAMVGASRPPPKPLRPRQLQEVGRQSSSDSGIATGSHSSYSSSLSSYAGSSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PAAAQAAGEAMVGASRPPPKPLRPRQLQEVGRQSSSDSGIATGSHSSYSSSLSSYAGSSL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE2 DVWRATDELGSLLSLPAAGAPEPSLCTCLPGTVEYQVPTSLRAHYDTPRSLCLAPRDHSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DVWRATDELGSLLSLPAAGAPEPSLCTCLPGTVEYQVPTSLRAHYDTPRSLCLAPRDHSP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE2 PSQGSPGNSAARDSGGQTSAGCPSGWLGTRRRGLVMEAPQGSEATLPGPAPGEPWEAGGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PSQGSPGNSAARDSGGQTSAGCPSGWLGTRRRGLVMEAPQGSEATLPGPAPGEPWEAGGP
430 440 450 460 470 480
490 500
pF1KE2 HAGPPPAFFSACPVCGGLKVNPPP
::::::::::::::::::::::::
CCDS33 HAGPPPAFFSACPVCGGLKVNPPP
490 500
>>CCDS87205.1 DOK7 gene_id:285489|Hs109|chr4 (464 aa)
initn: 2190 init1: 2190 opt: 2194 Z-score: 1515.1 bits: 289.8 E(33420): 4.6e-78
Smith-Waterman score: 2194; 92.9% identity (95.7% similar) in 352 aa overlap (148-499:7-355)
120 130 140 150 160 170
pF1KE2 VAPGTKLESGPATLHLCNDVLVLARDIPPAVTGQWKLSDLRRYGAVPSGFIFEGGTRCGY
: :: :: : ... . .... . .
CCDS87 MTEAALVEGQVKLRDGKKWKS--RWLVLRKPSPVAG
10 20 30
180 190 200 210 220 230
pF1KE2 WAGVFFLSSAEGEQISFLFDCIVRGISPTKGPFGLRPVLPDPSPPGPSTVEERVAQEALE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 -AGVFFLSSAEGEQISFLFDCIVRGISPTKGPFGLRPVLPDPSPPGPSTVEERVAQEALE
40 50 60 70 80 90
240 250 260 270 280 290
pF1KE2 TLQLEKRLSLLSHAGRPGSGGDDRSLSSSSSEASHLDVSASSRLTAWPEQSSSSASTSQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 TLQLEKRLSLLSHAGRPGSGGDDRSLSSSSSEASHLDVSASSRLTAWPEQSSSSASTSQE
100 110 120 130 140 150
300 310 320 330 340 350
pF1KE2 GPRPAAAQAAGEAMVGASRPPPKPLRPRQLQEVGRQSSSDSGIATGSHSSYSSSLSSYAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 GPRPAAAQAAGEAMVGASRPPPKPLRPRQLQEVGRQSSSDSGIATGSHSSYSSSLSSYAG
160 170 180 190 200 210
360 370 380 390 400 410
pF1KE2 SSLDVWRATDELGSLLSLPAAGAPEPSLCTCLPGTVEYQVPTSLRAHYDTPRSLCLAPRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 SSLDVWRATDELGSLLSLPAAGAPEPSLCTCLPGTVEYQVPTSLRAHYDTPRSLCLAPRD
220 230 240 250 260 270
420 430 440 450 460 470
pF1KE2 HSPPSQGSPGNSAARDSGGQTSAGCPSGWLGTRRRGLVMEAPQGSEATLPGPAPGEPWEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 HSPPSQGSPGNSAARDSGGQTSAGCPSGWLGTRRRGLVMEAPQGSEATLPGPAPGEPWEA
280 290 300 310 320 330
480 490 500
pF1KE2 GGPHAGPPPAFFSACPVCGGLKVNPPP
::::::::::::::::::::::
CCDS87 GGPHAGPPPAFFSACPVCGGLKGAAASAPGPATAHSGSPGPVAVDSPGPERPRGESPTYV
340 350 360 370 380 390
>>CCDS87206.1 DOK7 gene_id:285489|Hs109|chr4 (194 aa)
initn: 1377 init1: 1377 opt: 1377 Z-score: 961.9 bits: 186.1 E(33420): 3e-47
Smith-Waterman score: 1377; 100.0% identity (100.0% similar) in 194 aa overlap (311-504:1-194)
290 300 310 320 330 340
pF1KE2 LTAWPEQSSSSASTSQEGPRPAAAQAAGEAMVGASRPPPKPLRPRQLQEVGRQSSSDSGI
::::::::::::::::::::::::::::::
CCDS87 MVGASRPPPKPLRPRQLQEVGRQSSSDSGI
10 20 30
350 360 370 380 390 400
pF1KE2 ATGSHSSYSSSLSSYAGSSLDVWRATDELGSLLSLPAAGAPEPSLCTCLPGTVEYQVPTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 ATGSHSSYSSSLSSYAGSSLDVWRATDELGSLLSLPAAGAPEPSLCTCLPGTVEYQVPTS
40 50 60 70 80 90
410 420 430 440 450 460
pF1KE2 LRAHYDTPRSLCLAPRDHSPPSQGSPGNSAARDSGGQTSAGCPSGWLGTRRRGLVMEAPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS87 LRAHYDTPRSLCLAPRDHSPPSQGSPGNSAARDSGGQTSAGCPSGWLGTRRRGLVMEAPQ
100 110 120 130 140 150
470 480 490 500
pF1KE2 GSEATLPGPAPGEPWEAGGPHAGPPPAFFSACPVCGGLKVNPPP
::::::::::::::::::::::::::::::::::::::::::::
CCDS87 GSEATLPGPAPGEPWEAGGPHAGPPPAFFSACPVCGGLKVNPPP
160 170 180 190
>>CCDS54717.1 DOK7 gene_id:285489|Hs109|chr4 (255 aa)
initn: 1240 init1: 1179 opt: 1189 Z-score: 831.7 bits: 162.5 E(33420): 5.4e-40
Smith-Waterman score: 1189; 83.0% identity (87.9% similar) in 223 aa overlap (1-223:1-219)
10 20 30 40 50 60
pF1KE2 MTEAALVEGQVKLRDGKKWKSRWLVLRKPSPVADCLLMLVYKDKSERIKGLRERSSLTLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MTEAALVEGQVKLRDGKKWKSRWLVLRKPSPVADCLLMLVYKDKSERIKGLRERSSLTLE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 DICGLEPGLPYEGLVHTLAIVCLSQAIMLGFDSHEAMCAWDARIRYALGEVHRFHVTVAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DICGLEPGLPYEGLVHTLAIVCLSQAIMLGFDSHEAMCAWDARIRYALGEVHRFHVTVAP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 GTKLESGPATLHLCNDVLVLARDIPPAVTGQWKLSDLRRYGAVPSGFIFEGGTRCGYWAG
:::::::::::::::::::::::::::::::::::::::::::::::::::::: : :
CCDS54 GTKLESGPATLHLCNDVLVLARDIPPAVTGQWKLSDLRRYGAVPSGFIFEGGTR-G-WRL
130 140 150 160 170
190 200 210 220 230 240
pF1KE2 VFFLSSAEGEQISFLFDCIVRGISPTKGPFGLRPVLPDPSPPGPSTVEERVAQEALETLQ
. :. . ..:. . : . : .::. :. ::
CCDS54 LPVLGRGGADQLPVRLHRP-RHL-PHQGPLWAAAGSTRPKSPGTLDCGGACGPGSPGNPT
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE2 LEKRLSLLSHAGRPGSGGDDRSLSSSSSEASHLDVSASSRLTAWPEQSSSSASTSQEGPR
CCDS54 AGEAAEPPLTCGQAGQWRG
240 250
504 residues in 1 query sequences
18921897 residues in 33420 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Dec 17 11:06:48 2018 done: Mon Dec 17 11:06:49 2018
Total Scan time: 1.820 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]