FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1902, 429 aa 1>>>pF1KE1902 429 - 429 aa - 429 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.5516+/-0.000909; mu= 4.2533+/- 0.054 mean_var=223.8653+/-44.798, 0's: 0 Z-trim(113.5): 51 B-trim: 15 in 1/52 Lambda= 0.085720 statistics sampled from 14079 (14126) to 14079 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.434), width: 16 Scan time: 3.550 The best scores are: opt bits E(32554) CCDS3362.1 TNIP2 gene_id:79155|Hs108|chr4 ( 429) 2854 365.5 5.5e-101 CCDS54714.1 TNIP2 gene_id:79155|Hs108|chr4 ( 322) 2169 280.7 1.4e-75 CCDS75093.1 TNIP2 gene_id:79155|Hs108|chr4 ( 346) 1423 188.5 8.8e-48 >>CCDS3362.1 TNIP2 gene_id:79155|Hs108|chr4 (429 aa) initn: 2854 init1: 2854 opt: 2854 Z-score: 1926.5 bits: 365.5 E(32554): 5.5e-101 Smith-Waterman score: 2854; 100.0% identity (100.0% similar) in 429 aa overlap (1-429:1-429) 10 20 30 40 50 60 pF1KE1 MSRDPGSGGWEEAPRAAAALCTLYHEAGQRLRRLQDQLAARDALIARLRARLAALEGDAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 MSRDPGSGGWEEAPRAAAALCTLYHEAGQRLRRLQDQLAARDALIARLRARLAALEGDAA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 PSLVDALLEQVARFREQLRRQEGGAAEAQMRQEIERLTERLEEKEREMQQLLSQPQHERE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 PSLVDALLEQVARFREQLRRQEGGAAEAQMRQEIERLTERLEEKEREMQQLLSQPQHERE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 KEVVLLRRSMAEGERARAASDVLCRSLANETHQLRRTLTATAHMCQHLAKCLDERQHAQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 KEVVLLRRSMAEGERARAASDVLCRSLANETHQLRRTLTATAHMCQHLAKCLDERQHAQR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 NVGERSPDQSEHTDGHTSVQSVIEKLQEENRLLKQKVTHVEDLNAKWQRYNASRDEYVRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 NVGERSPDQSEHTDGHTSVQSVIEKLQEENRLLKQKVTHVEDLNAKWQRYNASRDEYVRG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 LHAQLRGLQIPHEPELMRKEISRLNRQLEEKINDCAEVKQELAASRTARDAALERVQMLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 LHAQLRGLQIPHEPELMRKEISRLNRQLEEKINDCAEVKQELAASRTARDAALERVQMLE 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 QQILAYKDDFMSERADRERAQSRIQELEEKVASLLHQVSWRQDSREPDAGRIHAGSKTAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 QQILAYKDDFMSERADRERAQSRIQELEEKVASLLHQVSWRQDSREPDAGRIHAGSKTAK 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 YLAADALELMVPGGWRPGTGSQQPEPPAEGGHPGAAQRGQGDLQCPHCLQCFSDEQGEEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 YLAADALELMVPGGWRPGTGSQQPEPPAEGGHPGAAQRGQGDLQCPHCLQCFSDEQGEEL 370 380 390 400 410 420 pF1KE1 LRHVAECCQ ::::::::: CCDS33 LRHVAECCQ >>CCDS54714.1 TNIP2 gene_id:79155|Hs108|chr4 (322 aa) initn: 2169 init1: 2169 opt: 2169 Z-score: 1470.3 bits: 280.7 E(32554): 1.4e-75 Smith-Waterman score: 2169; 100.0% identity (100.0% similar) in 322 aa overlap (108-429:1-322) 80 90 100 110 120 130 pF1KE1 LRRQEGGAAEAQMRQEIERLTERLEEKEREMQQLLSQPQHEREKEVVLLRRSMAEGERAR :::::::::::::::::::::::::::::: CCDS54 MQQLLSQPQHEREKEVVLLRRSMAEGERAR 10 20 30 140 150 160 170 180 190 pF1KE1 AASDVLCRSLANETHQLRRTLTATAHMCQHLAKCLDERQHAQRNVGERSPDQSEHTDGHT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 AASDVLCRSLANETHQLRRTLTATAHMCQHLAKCLDERQHAQRNVGERSPDQSEHTDGHT 40 50 60 70 80 90 200 210 220 230 240 250 pF1KE1 SVQSVIEKLQEENRLLKQKVTHVEDLNAKWQRYNASRDEYVRGLHAQLRGLQIPHEPELM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 SVQSVIEKLQEENRLLKQKVTHVEDLNAKWQRYNASRDEYVRGLHAQLRGLQIPHEPELM 100 110 120 130 140 150 260 270 280 290 300 310 pF1KE1 RKEISRLNRQLEEKINDCAEVKQELAASRTARDAALERVQMLEQQILAYKDDFMSERADR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 RKEISRLNRQLEEKINDCAEVKQELAASRTARDAALERVQMLEQQILAYKDDFMSERADR 160 170 180 190 200 210 320 330 340 350 360 370 pF1KE1 ERAQSRIQELEEKVASLLHQVSWRQDSREPDAGRIHAGSKTAKYLAADALELMVPGGWRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 ERAQSRIQELEEKVASLLHQVSWRQDSREPDAGRIHAGSKTAKYLAADALELMVPGGWRP 220 230 240 250 260 270 380 390 400 410 420 pF1KE1 GTGSQQPEPPAEGGHPGAAQRGQGDLQCPHCLQCFSDEQGEELLRHVAECCQ :::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 GTGSQQPEPPAEGGHPGAAQRGQGDLQCPHCLQCFSDEQGEELLRHVAECCQ 280 290 300 310 320 >>CCDS75093.1 TNIP2 gene_id:79155|Hs108|chr4 (346 aa) initn: 1453 init1: 1421 opt: 1423 Z-score: 971.3 bits: 188.5 E(32554): 8.8e-48 Smith-Waterman score: 2138; 80.7% identity (80.7% similar) in 429 aa overlap (1-429:1-346) 10 20 30 40 50 60 pF1KE1 MSRDPGSGGWEEAPRAAAALCTLYHEAGQRLRRLQDQLAARDALIARLRARLAALEGDAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 MSRDPGSGGWEEAPRAAAALCTLYHEAGQRLRRLQDQLAARDALIARLRARLAALEGDAA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 PSLVDALLEQVARFREQLRRQEGGAAEAQMRQEIERLTERLEEKEREMQQLLSQPQHERE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 PSLVDALLEQVARFREQLRRQEGGAAEAQMRQEIERLTERLEEKEREMQQLLSQPQHERE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 KEVVLLRRSMAEGERARAASDVLCRSLANETHQLRRTLTATAHMCQHLAKCLDERQHAQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 KEVVLLRRSMAEGERARAASDVLCRSLANETHQLRRTLTATAHMCQHLAKCLDERQHAQR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 NVGERSPDQSEHTDGHTSVQSVIEKLQEENRLLKQKVTHVEDLNAKWQRYNASRDEYVRG ::::::::::::::::::::::::::::::::::::::: CCDS75 NVGERSPDQSEHTDGHTSVQSVIEKLQEENRLLKQKVTH--------------------- 190 200 210 250 260 270 280 290 300 pF1KE1 LHAQLRGLQIPHEPELMRKEISRLNRQLEEKINDCAEVKQELAASRTARDAALERVQMLE CCDS75 ------------------------------------------------------------ 310 320 330 340 350 360 pF1KE1 QQILAYKDDFMSERADRERAQSRIQELEEKVASLLHQVSWRQDSREPDAGRIHAGSKTAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 --ILAYKDDFMSERADRERAQSRIQELEEKVASLLHQVSWRQDSREPDAGRIHAGSKTAK 220 230 240 250 260 270 370 380 390 400 410 420 pF1KE1 YLAADALELMVPGGWRPGTGSQQPEPPAEGGHPGAAQRGQGDLQCPHCLQCFSDEQGEEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 YLAADALELMVPGGWRPGTGSQQPEPPAEGGHPGAAQRGQGDLQCPHCLQCFSDEQGEEL 280 290 300 310 320 330 pF1KE1 LRHVAECCQ ::::::::: CCDS75 LRHVAECCQ 340 429 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 17:34:12 2016 done: Sun Nov 6 17:34:12 2016 Total Scan time: 3.550 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]