FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3248, 571 aa
  1>>>pF1KE3248 571 - 571 aa - 571 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.0837+/-0.000481; mu= -2.2373+/- 0.030
 mean_var=304.4247+/-62.439, 0's: 0 Z-trim(119.2): 13  B-trim: 1662 in 1/49
 Lambda= 0.073508
 statistics sampled from 32906 (32920) to 32906 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.386), width:  16
 Scan time: 12.020

The best scores are:                                      opt bits E(85289)
NP_689830 (OMIM: 611943,612688) E3 ubiquitin-prote ( 571) 3836 420.8  6e-117


>>NP_689830 (OMIM: 611943,612688) E3 ubiquitin-protein l  (571 aa)
 initn: 3836 init1: 3836 opt: 3836  Z-score: 2220.6  bits: 420.8 E(85289): 6e-117
Smith-Waterman score: 3836; 100.0% identity (100.0% similar) in 571 aa overlap (1-571:1-571)

               10        20        30        40        50        60
pF1KE3 MALPKDAIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 MALPKDAIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 WTRYHTRRNSLVNVELWTIIQKHYPRECKLRASGQESEEVADDYQPVRLLSKPGELRREY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 WTRYHTRRNSLVNVELWTIIQKHYPRECKLRASGQESEEVADDYQPVRLLSKPGELRREY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 EEEISKVAAERRASEEEENKASEEYIQRLLAEEEEEEKRQAEKRRRAMEEQLKSDEELAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 EEEISKVAAERRASEEEENKASEEYIQRLLAEEEEEEKRQAEKRRRAMEEQLKSDEELAR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 KLSIDINNFCEGSISASPLNSRKSDPVTPKSEKKSKNKQRNTGDIQKYLTPKSQFGSASH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 KLSIDINNFCEGSISASPLNSRKSDPVTPKSEKKSKNKQRNTGDIQKYLTPKSQFGSASH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 SEAVQEVRKDSVSKDIDSSDRKSPTGQDTEIEDMPTLSPQISLGVGEQGADSSIESPMPW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 SEAVQEVRKDSVSKDIDSSDRKSPTGQDTEIEDMPTLSPQISLGVGEQGADSSIESPMPW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 LCACGAEWYHEGNVKTRPSNHGKELCVLSHERPKTRVPYSKETAVMPCGRTESGCAPTSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 LCACGAEWYHEGNVKTRPSNHGKELCVLSHERPKTRVPYSKETAVMPCGRTESGCAPTSG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 VTQTNGNNTGETENEESCLLISKEISKRKNQESSFEAVKDPCFSAKRRKVSPESSPDQEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 VTQTNGNNTGETENEESCLLISKEISKRKNQESSFEAVKDPCFSAKRRKVSPESSPDQEE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 TEINFTQKLIDLEHLLFERHKQEEQDRLLALQLQKEVDKEQMVPNRQKGSPDEYHLRATS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 TEINFTQKLIDLEHLLFERHKQEEQDRLLALQLQKEVDKEQMVPNRQKGSPDEYHLRATS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE3 SPPDKVLNGQRKNPKDGNFKRQTHTKHPTPERGSRDKNRQVSLKMQLKQSVNRRKMPNST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 SPPDKVLNGQRKNPKDGNFKRQTHTKHPTPERGSRDKNRQVSLKMQLKQSVNRRKMPNST
              490       500       510       520       530       540

              550       560       570 
pF1KE3 RDHCKVSKSAHSLQPSISQKSVFQMFQRCTK
       :::::::::::::::::::::::::::::::
NP_689 RDHCKVSKSAHSLQPSISQKSVFQMFQRCTK
              550       560       570 




571 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:34:50 2016 done: Sun Nov  6 17:34:51 2016
 Total Scan time: 12.020 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]