FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3248, 571 aa
  1>>>pF1KE3248 571 - 571 aa - 571 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.4768+/-0.00114; mu= 1.6614+/- 0.069
 mean_var=284.6437+/-58.761, 0's: 0 Z-trim(111.6): 46  B-trim: 0 in 0/51
 Lambda= 0.076019
 statistics sampled from 12512 (12534) to 12512 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.385), width:  16
 Scan time:  3.820

The best scores are:                                      opt bits E(32554)
CCDS3317.1 RNF168 gene_id:165918|Hs108|chr3        ( 571) 3836 434.4 1.8e-121


>>CCDS3317.1 RNF168 gene_id:165918|Hs108|chr3             (571 aa)
 initn: 3836 init1: 3836 opt: 3836  Z-score: 2294.5  bits: 434.4 E(32554): 1.8e-121
Smith-Waterman score: 3836; 100.0% identity (100.0% similar) in 571 aa overlap (1-571:1-571)

               10        20        30        40        50        60
pF1KE3 MALPKDAIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MALPKDAIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 WTRYHTRRNSLVNVELWTIIQKHYPRECKLRASGQESEEVADDYQPVRLLSKPGELRREY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 WTRYHTRRNSLVNVELWTIIQKHYPRECKLRASGQESEEVADDYQPVRLLSKPGELRREY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 EEEISKVAAERRASEEEENKASEEYIQRLLAEEEEEEKRQAEKRRRAMEEQLKSDEELAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EEEISKVAAERRASEEEENKASEEYIQRLLAEEEEEEKRQAEKRRRAMEEQLKSDEELAR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 KLSIDINNFCEGSISASPLNSRKSDPVTPKSEKKSKNKQRNTGDIQKYLTPKSQFGSASH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KLSIDINNFCEGSISASPLNSRKSDPVTPKSEKKSKNKQRNTGDIQKYLTPKSQFGSASH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 SEAVQEVRKDSVSKDIDSSDRKSPTGQDTEIEDMPTLSPQISLGVGEQGADSSIESPMPW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SEAVQEVRKDSVSKDIDSSDRKSPTGQDTEIEDMPTLSPQISLGVGEQGADSSIESPMPW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 LCACGAEWYHEGNVKTRPSNHGKELCVLSHERPKTRVPYSKETAVMPCGRTESGCAPTSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LCACGAEWYHEGNVKTRPSNHGKELCVLSHERPKTRVPYSKETAVMPCGRTESGCAPTSG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 VTQTNGNNTGETENEESCLLISKEISKRKNQESSFEAVKDPCFSAKRRKVSPESSPDQEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 VTQTNGNNTGETENEESCLLISKEISKRKNQESSFEAVKDPCFSAKRRKVSPESSPDQEE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 TEINFTQKLIDLEHLLFERHKQEEQDRLLALQLQKEVDKEQMVPNRQKGSPDEYHLRATS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 TEINFTQKLIDLEHLLFERHKQEEQDRLLALQLQKEVDKEQMVPNRQKGSPDEYHLRATS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE3 SPPDKVLNGQRKNPKDGNFKRQTHTKHPTPERGSRDKNRQVSLKMQLKQSVNRRKMPNST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SPPDKVLNGQRKNPKDGNFKRQTHTKHPTPERGSRDKNRQVSLKMQLKQSVNRRKMPNST
              490       500       510       520       530       540

              550       560       570 
pF1KE3 RDHCKVSKSAHSLQPSISQKSVFQMFQRCTK
       :::::::::::::::::::::::::::::::
CCDS33 RDHCKVSKSAHSLQPSISQKSVFQMFQRCTK
              550       560       570 




571 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:34:49 2016 done: Sun Nov  6 17:34:49 2016
 Total Scan time:  3.820 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]