FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4385, 406 aa 1>>>pF1KE4385 406 - 406 aa - 406 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1732+/-0.000779; mu= 18.1981+/- 0.047 mean_var=71.1687+/-14.045, 0's: 0 Z-trim(108.3): 40 B-trim: 0 in 0/51 Lambda= 0.152030 statistics sampled from 10111 (10151) to 10111 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.312), width: 16 Scan time: 2.610 The best scores are: opt bits E(32554) CCDS3285.1 ST6GAL1 gene_id:6480|Hs108|chr3 ( 406) 2787 620.3 9.9e-178 CCDS46973.1 ST6GAL1 gene_id:6480|Hs108|chr3 ( 175) 1241 281.0 6.1e-76 CCDS2073.1 ST6GAL2 gene_id:84620|Hs108|chr2 ( 529) 1107 251.9 1e-66 CCDS46380.1 ST6GAL2 gene_id:84620|Hs108|chr2 ( 466) 760 175.8 7.5e-44 >>CCDS3285.1 ST6GAL1 gene_id:6480|Hs108|chr3 (406 aa) initn: 2787 init1: 2787 opt: 2787 Z-score: 3304.3 bits: 620.3 E(32554): 9.9e-178 Smith-Waterman score: 2787; 100.0% identity (100.0% similar) in 406 aa overlap (1-406:1-406) 10 20 30 40 50 60 pF1KE4 MIHTNLKKKFSCCVLVFLLFAVICVWKEKKKGSYYDSFKLQTKEFQVLKSLGKLAMGSDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 MIHTNLKKKFSCCVLVFLLFAVICVWKEKKKGSYYDSFKLQTKEFQVLKSLGKLAMGSDS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 QSVSSSSTQDPHRGRQTLGSLRGLAKAKPEASFQVWNKDSSSKNLIPRLQKIWKNYLSMN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 QSVSSSSTQDPHRGRQTLGSLRGLAKAKPEASFQVWNKDSSSKNLIPRLQKIWKNYLSMN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 KYKVSYKGPGPGIKFSAEALRCHLRDHVNVSMVEVTDFPFNTSEWEGYLPKESIRTKAGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 KYKVSYKGPGPGIKFSAEALRCHLRDHVNVSMVEVTDFPFNTSEWEGYLPKESIRTKAGP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 WGRCAVVSSAGSLKSSQLGREIDDHDAVLRFNGAPTANFQQDVGTKTTIRLMNSQLVTTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 WGRCAVVSSAGSLKSSQLGREIDDHDAVLRFNGAPTANFQQDVGTKTTIRLMNSQLVTTE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 KRFLKDSLYNEGILIVWDPSVYHSDIPKWYQNPDYNFFNNYKTYRKLHPNQPFYILKPQM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 KRFLKDSLYNEGILIVWDPSVYHSDIPKWYQNPDYNFFNNYKTYRKLHPNQPFYILKPQM 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 PWELWDILQEISPEEIQPNPPSSGMLGIIIMMTLCDQVDIYEFLPSKRKTDVCYYYQKFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS32 PWELWDILQEISPEEIQPNPPSSGMLGIIIMMTLCDQVDIYEFLPSKRKTDVCYYYQKFF 310 320 330 340 350 360 370 380 390 400 pF1KE4 DSACTMGAYHPLLYEKNLVKHLNQGTDEDIYLLGKATLPGFRTIHC :::::::::::::::::::::::::::::::::::::::::::::: CCDS32 DSACTMGAYHPLLYEKNLVKHLNQGTDEDIYLLGKATLPGFRTIHC 370 380 390 400 >>CCDS46973.1 ST6GAL1 gene_id:6480|Hs108|chr3 (175 aa) initn: 1241 init1: 1241 opt: 1241 Z-score: 1476.9 bits: 281.0 E(32554): 6.1e-76 Smith-Waterman score: 1241; 100.0% identity (100.0% similar) in 175 aa overlap (232-406:1-175) 210 220 230 240 250 260 pF1KE4 IDDHDAVLRFNGAPTANFQQDVGTKTTIRLMNSQLVTTEKRFLKDSLYNEGILIVWDPSV :::::::::::::::::::::::::::::: CCDS46 MNSQLVTTEKRFLKDSLYNEGILIVWDPSV 10 20 30 270 280 290 300 310 320 pF1KE4 YHSDIPKWYQNPDYNFFNNYKTYRKLHPNQPFYILKPQMPWELWDILQEISPEEIQPNPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 YHSDIPKWYQNPDYNFFNNYKTYRKLHPNQPFYILKPQMPWELWDILQEISPEEIQPNPP 40 50 60 70 80 90 330 340 350 360 370 380 pF1KE4 SSGMLGIIIMMTLCDQVDIYEFLPSKRKTDVCYYYQKFFDSACTMGAYHPLLYEKNLVKH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 SSGMLGIIIMMTLCDQVDIYEFLPSKRKTDVCYYYQKFFDSACTMGAYHPLLYEKNLVKH 100 110 120 130 140 150 390 400 pF1KE4 LNQGTDEDIYLLGKATLPGFRTIHC ::::::::::::::::::::::::: CCDS46 LNQGTDEDIYLLGKATLPGFRTIHC 160 170 >>CCDS2073.1 ST6GAL2 gene_id:84620|Hs108|chr2 (529 aa) initn: 722 init1: 722 opt: 1107 Z-score: 1311.3 bits: 251.9 E(32554): 1e-66 Smith-Waterman score: 1107; 48.9% identity (80.1% similar) in 317 aa overlap (93-406:205-519) 70 80 90 100 110 120 pF1KE4 VSSSSTQDPHRGRQTLGSLRGLAKAKPEASFQVWNKDSSSKNLIPRLQKIWKNYLSMNKY ...:. . ::: : ::::: :.::. ::. CCDS20 KRHRRQRRSHVLEEGDDGDRLYSSMSRAFLYRLWKGNVSSKMLNPRLQKAMKDYLTANKH 180 190 200 210 220 230 130 140 150 160 170 180 pF1KE4 KVSYKGPGPGIKFSAEALRCHLRDHVNVSMVEVTDFPFNTSEWEGYLPKESIRTKAGPWG : ..: . .: : :.::... : .. :. ::.. :. .: . .. : : CCDS20 GVRFRGKREA-GLSRAQLLCQLRSRARVRTLDGTEAPFSALGWRRLVPAVPL-SQLHPRG 240 250 260 270 280 290 190 200 210 220 230 240 pF1KE4 --RCAVVSSAGSLKSSQLGREIDDHDAVLRFNGAPTANFQQDVGTKTTIRLMNSQLVTTE :::: :::.. .:.::.:::.::::::::.::: ....:::.:::::..:::..:. CCDS20 LRSCAVVMSAGAILNSSLGEEIDSHDAVLRFNSAPTRGYEKDVGNKTTIRIINSQILTNP 300 310 320 330 340 350 250 260 270 280 290 pF1KE4 KR-FLKDSLYNEGILIVWDPSVYHSDIPKWYQNPDYNFFNNYKTYRKLHPNQPFYILKPQ .. :. .:::.. ::..:::. : ... ::..::::.:. : .:. .::::::::.:. CCDS20 SHHFIDSSLYKDVILVAWDPAPYSANLNLWYKKPDYNLFTPYIQHRQRNPNQPFYILHPK 360 370 380 390 400 410 300 310 320 330 340 350 pF1KE4 MPWELWDILQEISPEEIQPNPPSSGMLGIIIMMTLCDQVDIYEFLPSKRKTDVCYYYQKF . :.::::.:: . :.:::::::::..::.:::..: .: .::..:: :.:..:.:.. . CCDS20 FIWQLWDIIQENTKEKIQPNPPSSGFIGILIMMSMCREVHVYEYIPSVRQTELCHYHELY 420 430 440 450 460 470 360 370 380 390 400 pF1KE4 FDSACTMGAYHPLLYEKNLVKHLNQGTDEDIYLLGKATLPGFRTIHC .:.:::.:::::::::: ::..::.::. :.. ::..::::...:: CCDS20 YDAACTLGAYHPLLYEKLLVQRLNMGTQGDLHRKGKVVLPGFQAVHCPAPSPVIPHS 480 490 500 510 520 >>CCDS46380.1 ST6GAL2 gene_id:84620|Hs108|chr2 (466 aa) initn: 634 init1: 363 opt: 760 Z-score: 900.7 bits: 175.8 E(32554): 7.5e-44 Smith-Waterman score: 760; 46.5% identity (76.8% similar) in 241 aa overlap (93-330:205-443) 70 80 90 100 110 120 pF1KE4 VSSSSTQDPHRGRQTLGSLRGLAKAKPEASFQVWNKDSSSKNLIPRLQKIWKNYLSMNKY ...:. . ::: : ::::: :.::. ::. CCDS46 KRHRRQRRSHVLEEGDDGDRLYSSMSRAFLYRLWKGNVSSKMLNPRLQKAMKDYLTANKH 180 190 200 210 220 230 130 140 150 160 170 180 pF1KE4 KVSYKGPGPGIKFSAEALRCHLRDHVNVSMVEVTDFPFNTSEWEGYLPKESIRTKAGPWG : ..: . .: : :.::... : .. :. ::.. :. .: . .. : : CCDS46 GVRFRGKREA-GLSRAQLLCQLRSRARVRTLDGTEAPFSALGWRRLVPAVPL-SQLHPRG 240 250 260 270 280 290 190 200 210 220 230 240 pF1KE4 --RCAVVSSAGSLKSSQLGREIDDHDAVLRFNGAPTANFQQDVGTKTTIRLMNSQLVTTE :::: :::.. .:.::.:::.::::::::.::: ....:::.:::::..:::..:. CCDS46 LRSCAVVMSAGAILNSSLGEEIDSHDAVLRFNSAPTRGYEKDVGNKTTIRIINSQILTNP 300 310 320 330 340 350 250 260 270 280 290 pF1KE4 KR-FLKDSLYNEGILIVWDPSVYHSDIPKWYQNPDYNFFNNYKTYRKLHPNQPFYILKPQ .. :. .:::.. ::..:::. : ... ::..::::.:. : .:. .::::::::.:. CCDS46 SHHFIDSSLYKDVILVAWDPAPYSANLNLWYKKPDYNLFTPYIQHRQRNPNQPFYILHPK 360 370 380 390 400 410 300 310 320 330 340 350 pF1KE4 MPWELWDILQEISPEEIQPNPPSSGMLGIIIMMTLCDQVDIYEFLPSKRKTDVCYYYQKF . :.::::.:: . :.:::::::::..: .. CCDS46 FIWQLWDIIQENTKEKIQPNPPSSGFIGSFVKIGHIRACSEPRSRDCTPAWTTE 420 430 440 450 460 360 370 380 390 400 pF1KE4 FDSACTMGAYHPLLYEKNLVKHLNQGTDEDIYLLGKATLPGFRTIHC 406 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 22:57:31 2016 done: Sat Nov 5 22:57:32 2016 Total Scan time: 2.610 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]