FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4014, 192 aa 1>>>pF1KE4014 192 - 192 aa - 192 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2065+/-0.000896; mu= 13.5627+/- 0.054 mean_var=71.6432+/-15.292, 0's: 0 Z-trim(106.8): 159 B-trim: 793 in 2/51 Lambda= 0.151526 statistics sampled from 8989 (9178) to 8989 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.282), width: 16 Scan time: 1.960 The best scores are: opt bits E(32554) CCDS3192.1 ARL14 gene_id:80117|Hs108|chr3 ( 192) 1264 285.2 1.7e-77 CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 ( 175) 560 131.3 3.3e-31 CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 ( 181) 548 128.7 2.1e-30 CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 ( 181) 548 128.7 2.1e-30 CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 ( 180) 541 127.1 6.1e-30 CCDS2884.1 ARF4 gene_id:378|Hs108|chr3 ( 180) 531 124.9 2.8e-29 CCDS2512.1 ARL4C gene_id:10123|Hs108|chr2 ( 192) 505 119.3 1.5e-27 CCDS63169.1 ARL4C gene_id:10123|Hs108|chr2 ( 201) 505 119.3 1.5e-27 CCDS9419.1 ARL11 gene_id:115761|Hs108|chr13 ( 196) 502 118.6 2.4e-27 CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5 ( 574) 498 118.1 1e-26 CCDS11463.1 ARL4D gene_id:379|Hs108|chr17 ( 201) 489 115.8 1.7e-26 CCDS5359.1 ARL4A gene_id:10124|Hs108|chr7 ( 200) 484 114.7 3.7e-26 CCDS8088.1 ARL2 gene_id:402|Hs108|chr11 ( 184) 482 114.2 4.7e-26 CCDS7131.1 ARL5B gene_id:221079|Hs108|chr10 ( 179) 476 112.9 1.1e-25 CCDS43322.1 TRIM23 gene_id:373|Hs108|chr5 ( 569) 469 111.7 8.2e-25 CCDS44958.1 ARL1 gene_id:400|Hs108|chr12 ( 181) 458 109.0 1.8e-24 CCDS7538.1 ARL3 gene_id:403|Hs108|chr10 ( 182) 456 108.5 2.4e-24 CCDS2195.1 ARL5A gene_id:26225|Hs108|chr2 ( 179) 454 108.1 3.2e-24 CCDS3986.1 TRIM23 gene_id:373|Hs108|chr5 ( 546) 423 101.7 8.5e-22 CCDS46425.1 ARL5A gene_id:26225|Hs108|chr2 ( 142) 375 90.8 4.2e-19 CCDS45664.1 ARL5C gene_id:390790|Hs108|chr17 ( 179) 360 87.6 4.9e-18 CCDS13533.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 201) 360 87.6 5.4e-18 CCDS46630.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 173) 341 83.4 8.5e-17 CCDS2928.1 ARL6 gene_id:84100|Hs108|chr3 ( 186) 337 82.5 1.7e-16 CCDS55770.1 ARL2 gene_id:402|Hs108|chr11 ( 157) 335 82.1 2e-16 CCDS73510.1 ARL1 gene_id:400|Hs108|chr12 ( 135) 328 80.5 5e-16 CCDS1421.1 ARL8A gene_id:127829|Hs108|chr1 ( 186) 317 78.2 3.4e-15 CCDS68172.1 ARFRP1 gene_id:10139|Hs108|chr20 ( 154) 316 77.9 3.4e-15 CCDS2925.1 ARL13B gene_id:200894|Hs108|chr3 ( 428) 317 78.4 6.6e-15 CCDS2566.1 ARL8B gene_id:55207|Hs108|chr3 ( 186) 312 77.1 7.3e-15 CCDS54850.1 ARL15 gene_id:54622|Hs108|chr5 ( 204) 299 74.3 5.6e-14 CCDS4177.1 SAR1B gene_id:51128|Hs108|chr5 ( 198) 296 73.6 8.7e-14 CCDS7298.1 SAR1A gene_id:56681|Hs108|chr10 ( 198) 286 71.4 3.9e-13 CCDS4400.1 ARL10 gene_id:285598|Hs108|chr5 ( 244) 256 64.9 4.4e-11 CCDS74086.1 ARL17A gene_id:51326|Hs108|chr17 ( 88) 246 62.4 8.9e-11 >>CCDS3192.1 ARL14 gene_id:80117|Hs108|chr3 (192 aa) initn: 1264 init1: 1264 opt: 1264 Z-score: 1504.9 bits: 285.2 E(32554): 1.7e-77 Smith-Waterman score: 1264; 99.5% identity (99.5% similar) in 192 aa overlap (1-192:1-192) 10 20 30 40 50 60 pF1KE4 MGSLGSKNPQTKQAQVLLLGLDSAGKSTLLYKLKLAKDITTIPTIGFNVEMIELERNLSL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 MGSLGSKNPQTKQAQVLLLGLDSAGKSTLLYKLKLAKDITTIPTIGFNVEMIELERNLSL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 TVWDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHILKNEHIKNVTVVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::: CCDS31 TVWDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHILKNEHIKNVPVVL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 LANKQDMPGALTAEDITRMFKVKKLCSDRNWYVQPCCALTGEGLAQGFRKLTGFVKSHMK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 LANKQDMPGALTAEDITRMFKVKKLCSDRNWYVQPCCALTGEGLAQGFRKLTGFVKSHMK 130 140 150 160 170 180 190 pF1KE4 SRGDTLAFFKQN :::::::::::: CCDS31 SRGDTLAFFKQN 190 >>CCDS9695.1 ARF6 gene_id:382|Hs108|chr14 (175 aa) initn: 547 init1: 245 opt: 560 Z-score: 673.7 bits: 131.3 E(32554): 3.3e-31 Smith-Waterman score: 560; 44.1% identity (81.9% similar) in 177 aa overlap (1-177:1-175) 10 20 30 40 50 60 pF1KE4 MGSLGSKNPQTKQAQVLLLGLDSAGKSTLLYKLKLAKDITTIPTIGFNVEMIELERNLSL ::.. :: .:. ..:.::::.:::.:.::::::....:::::.::::: . .:... CCDS96 MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTY-KNVKF 10 20 30 40 50 70 80 90 100 110 120 pF1KE4 TVWDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHILKNEHIKNVTVVL .:::::::.:.: .: : .:.::..::: .:..:..:.......:......... ... CCDS96 NVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILI 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE4 LANKQDMPGALTAEDITRMFKVKKLCSDRNWYVQPCCALTGEGLAQGFRKLTGFVKSHMK .:::::.: :. ..: . . . .. :::::::: :: .:.:: .:. ::. :: CCDS96 FANKQDLPDAMKPHEIQEKLGLTRI-RDRNWYVQPSCATSGDGLYEGLTWLTSNYKS 120 130 140 150 160 170 190 pF1KE4 SRGDTLAFFKQN >>CCDS8774.1 ARF3 gene_id:377|Hs108|chr12 (181 aa) initn: 542 init1: 288 opt: 548 Z-score: 659.3 bits: 128.7 E(32554): 2.1e-30 Smith-Waterman score: 548; 46.4% identity (84.9% similar) in 166 aa overlap (12-177:16-179) 10 20 30 40 50 pF1KE4 MGSLGSKNPQTKQAQVLLLGLDSAGKSTLLYKLKLAKDITTIPTIGFNVEMIELER :. ..:..:::.:::.:.::::::.. .::::::::::: .: . CCDS87 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-K 10 20 30 40 50 60 70 80 90 100 110 pF1KE4 NLSLTVWDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHILKNEHIKNV :.:.::::::::.:.: .: : .::.::..::::.:..:..:..... ..: ....... CCDS87 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDA 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE4 TVVLLANKQDMPGALTAEDITRMFKVKKLCSDRNWYVQPCCALTGEGLAQGFRKLTGFVK .....:::::.:.:..: .:: . ...: ::::.: :: .:.:: .:. :.. .: CCDS87 VLLVFANKQDLPNAMNAAEITDKLGLHSL-RHRNWYIQATCATSGDGLYEGLDWLANQLK 120 130 140 150 160 170 180 190 pF1KE4 SHMKSRGDTLAFFKQN . CCDS87 NKK 180 >>CCDS1565.1 ARF1 gene_id:375|Hs108|chr1 (181 aa) initn: 542 init1: 288 opt: 548 Z-score: 659.3 bits: 128.7 E(32554): 2.1e-30 Smith-Waterman score: 548; 45.5% identity (85.0% similar) in 167 aa overlap (12-178:16-180) 10 20 30 40 50 pF1KE4 MGSLGSKNPQTKQAQVLLLGLDSAGKSTLLYKLKLAKDITTIPTIGFNVEMIELER :. ..:..:::.:::.:.::::::.. .::::::::::: .: . CCDS15 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-K 10 20 30 40 50 60 70 80 90 100 110 pF1KE4 NLSLTVWDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHILKNEHIKNV :.:.::::::::.:.: .: : .::.::..::::.:..:..:..... ..: ....... CCDS15 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDA 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE4 TVVLLANKQDMPGALTAEDITRMFKVKKLCSDRNWYVQPCCALTGEGLAQGFRKLTGFVK .....:::::.:.:..: .:: . ...: ::::.: :: .:.:: .:. :.. .. CCDS15 VLLVFANKQDLPNAMNAAEITDKLGLHSL-RHRNWYIQATCATSGDGLYEGLDWLSNQLR 120 130 140 150 160 170 180 190 pF1KE4 SHMKSRGDTLAFFKQN .. CCDS15 NQK 180 >>CCDS34745.1 ARF5 gene_id:381|Hs108|chr7 (180 aa) initn: 512 init1: 274 opt: 541 Z-score: 651.1 bits: 127.1 E(32554): 6.1e-30 Smith-Waterman score: 541; 45.9% identity (81.4% similar) in 172 aa overlap (1-172:5-174) 10 20 30 40 50 pF1KE4 MGSLGSKNPQTKQAQVLLLGLDSAGKSTLLYKLKLAKDITTIPTIGFNVEMIELER ...: :. :: ..:..:::.:::.:.::::::.. .::::::::::: .: . CCDS34 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-K 10 20 30 40 50 60 70 80 90 100 110 pF1KE4 NLSLTVWDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHILKNEHIKNV :. .::::::::.:.: .: : .::.::..::::.:..:..:: .....:........ CCDS34 NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDA 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE4 TVVLLANKQDMPGALTAEDITRMFKVKKLCSDRNWYVQPCCALTGEGLAQGFRKLTGFVK .....:::::::.:. . ..: . ...: : :.:::: :: : :: .:. :. CCDS34 VLLVFANKQDMPNAMPVSELTDKLGLQHLRS-RTWYVQATCATQGTGLYDGLDWLSHELS 120 130 140 150 160 170 180 190 pF1KE4 SHMKSRGDTLAFFKQN CCDS34 KR 180 >>CCDS2884.1 ARF4 gene_id:378|Hs108|chr3 (180 aa) initn: 503 init1: 258 opt: 531 Z-score: 639.3 bits: 124.9 E(32554): 2.8e-29 Smith-Waterman score: 531; 44.8% identity (79.7% similar) in 172 aa overlap (1-172:5-174) 10 20 30 40 50 pF1KE4 MGSLGSKNPQTKQAQVLLLGLDSAGKSTLLYKLKLAKDITTIPTIGFNVEMIELER ..:: :. :: ..:..:::.:::.:.::::::.. .::::::::::: .: . CCDS28 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY-K 10 20 30 40 50 60 70 80 90 100 110 pF1KE4 NLSLTVWDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHILKNEHIKNV :. .::::::::...: .: : .::.::..::::.:..:..: .....: ...... CCDS28 NICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDA 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE4 TVVLLANKQDMPGALTAEDITRMFKVKKLCSDRNWYVQPCCALTGEGLAQGFRKLTGFVK ...:.:::::.:.:.. ..: . ...: .:.:::: :: : :: .:. :. CCDS28 VLLLFANKQDLPNAMAISEMTDKLGLQSL-RNRTWYVQATCATQGTGLYEGLDWLSNELS 120 130 140 150 160 170 180 190 pF1KE4 SHMKSRGDTLAFFKQN CCDS28 KR 180 >>CCDS2512.1 ARL4C gene_id:10123|Hs108|chr2 (192 aa) initn: 505 init1: 342 opt: 505 Z-score: 608.1 bits: 119.3 E(32554): 1.5e-27 Smith-Waterman score: 505; 40.5% identity (76.2% similar) in 185 aa overlap (1-181:1-185) 10 20 30 40 50 pF1KE4 MGSLGSKNPQTKQAQVLLLGLDSAGKSTLLYKLKLAKDITTIPTIGFNVEMIELE----R ::...:. .. ....::::::::.:.::.::. . ..:.::::::.: :.: . CCDS25 MGNISSNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTAK 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE4 NLSLTVWDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHILKNEHIKNV ..: ::::::::.: .: : . :::..:::::.: .::::.. ..... : . ... CCDS25 GISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGT 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE4 TVVLLANKQDMPGALTAEDITRMFKVKKLCSDRNWYVQPCCALTGEGLAQGFRKLTGFVK ....:::::.: .: . .: ... ...: ...::: ::. ::::..:. :: .. CCDS25 PLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLYEMIL 130 140 150 160 170 180 180 190 pF1KE4 SHMKSRGDTLAFFKQN .. :: CCDS25 KRRKSLKQKKKR 190 >>CCDS63169.1 ARL4C gene_id:10123|Hs108|chr2 (201 aa) initn: 505 init1: 342 opt: 505 Z-score: 607.9 bits: 119.3 E(32554): 1.5e-27 Smith-Waterman score: 505; 40.5% identity (76.2% similar) in 185 aa overlap (1-181:1-185) 10 20 30 40 50 pF1KE4 MGSLGSKNPQTKQAQVLLLGLDSAGKSTLLYKLKLAKDITTIPTIGFNVEMIELE----R ::...:. .. ....::::::::.:.::.::. . ..:.::::::.: :.: . CCDS63 MGNISSNISAFQSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTIGFNTEKIKLSNGTAK 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE4 NLSLTVWDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHILKNEHIKNV ..: ::::::::.: .: : . :::..:::::.: .::::.. ..... : . ... CCDS63 GISCHFWDVGGQEKLRPLWKSYSRCTDGIIYVVDSVDVDRLEEAKTELHKVTKFAENQGT 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE4 TVVLLANKQDMPGALTAEDITRMFKVKKLCSDRNWYVQPCCALTGEGLAQGFRKLTGFVK ....:::::.: .: . .: ... ...: ...::: ::. ::::..:. :: .. CCDS63 PLLVIANKQDLPKSLPVAEIEKQLALHELIPATTYHVQPACAIIGEGLTEGMDKLYEMIL 130 140 150 160 170 180 180 190 pF1KE4 SHMKSRGDTLAFFKQN .. :: CCDS63 KRRKSLKQKKKRTGDLRSCEV 190 200 >>CCDS9419.1 ARL11 gene_id:115761|Hs108|chr13 (196 aa) initn: 518 init1: 405 opt: 502 Z-score: 604.5 bits: 118.6 E(32554): 2.4e-27 Smith-Waterman score: 502; 45.2% identity (76.3% similar) in 177 aa overlap (1-177:1-175) 10 20 30 40 50 60 pF1KE4 MGSLGSKNPQTKQAQVLLLGLDSAGKSTLLYKLKLAKDITTIPTIGFNVEMIELERNLSL :::..:.. .. .:::...:::::::.::::::: . . :.::.::::: .. ..:: CCDS94 MGSVNSRGHKA-EAQVVMMGLDSAGKTTLLYKLKGHQLVETLPTVGFNVEPLKAPGHVSL 10 20 30 40 50 70 80 90 100 110 120 pF1KE4 TVWDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHILKNEHIKNVTVVL :.:::::: .:. : : :.:: ::::.::::. :: :: .. ..:.. .. .: .. CCDS94 TLWDVGGQAPLRASWKDYLEGTDILVYVLDSTDEARLPESAAELTEVLNDPNMAGVPFLV 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE4 LANKQDMPGALTAEDITRMFKVKKLCSDRNWYVQPCCALTGEGLAQGFRKLTGFVKSHMK :::::. : :: : ...... .:. : .. : ::::::: .....: ...:: CCDS94 LANKQEAPDALPLLKIRNRLSLERF-QDHCWELRGCSALTGEGLPEALQSLWSLLKSRSC 120 130 140 150 160 170 190 pF1KE4 SRGDTLAFFKQN CCDS94 MCLQARAHGAERGDSKRS 180 190 >>CCDS3987.1 TRIM23 gene_id:373|Hs108|chr5 (574 aa) initn: 485 init1: 359 opt: 498 Z-score: 593.1 bits: 118.1 E(32554): 1e-26 Smith-Waterman score: 498; 43.8% identity (80.6% similar) in 160 aa overlap (13-172:404-562) 10 20 30 40 pF1KE4 MGSLGSKNPQTKQAQVLLLGLDSAGKSTLLYKLKLAKDITTI . .:. ::::.:::.:.:.::: . . : CCDS39 FTEVADHIQLDASIPVTFTKDNRVHIGPKMEIRVVTLGLDGAGKTTILFKLKQDEFMQPI 380 390 400 410 420 430 50 60 70 80 90 100 pF1KE4 PTIGFNVEMIELERNLSLTVWDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQR :::::::: .: .::..:.:::::..:.: .: : ::...:.::::. ..:. :.. CCDS39 PTIGFNVETVEY-KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHS 440 450 460 470 480 490 110 120 130 140 150 160 pF1KE4 QFEHILKNEHIKNVTVVLLANKQDMPGALTAEDITRMFKVKKLCSDRNWYVQPCCALTGE .. ..: ....... ....:::::. :::..:.::......::: :.::.: : : .: CCDS39 ELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGM 500 510 520 530 540 550 170 180 190 pF1KE4 GLAQGFRKLTGFVKSHMKSRGDTLAFFKQN :: .:. :. CCDS39 GLYEGLDWLSRQLVAAGVLDVA 560 570 192 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 04:22:59 2016 done: Sun Nov 6 04:22:59 2016 Total Scan time: 1.960 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]