FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4077, 403 aa 1>>>pF1KE4077 403 - 403 aa - 403 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.2931+/-0.00113; mu= 8.4203+/- 0.067 mean_var=160.4748+/-33.335, 0's: 0 Z-trim(108.3): 113 B-trim: 232 in 1/50 Lambda= 0.101244 statistics sampled from 9979 (10094) to 9979 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.31), width: 16 Scan time: 2.730 The best scores are: opt bits E(32554) CCDS3190.1 TRIM59 gene_id:286827|Hs108|chr3 ( 403) 2717 409.1 3.8e-114 CCDS9423.1 TRIM13 gene_id:10206|Hs108|chr13 ( 407) 724 118.0 1.6e-26 CCDS41888.1 TRIM13 gene_id:10206|Hs108|chr13 ( 410) 724 118.0 1.7e-26 >>CCDS3190.1 TRIM59 gene_id:286827|Hs108|chr3 (403 aa) initn: 2717 init1: 2717 opt: 2717 Z-score: 2162.7 bits: 409.1 E(32554): 3.8e-114 Smith-Waterman score: 2717; 100.0% identity (100.0% similar) in 403 aa overlap (1-403:1-403) 10 20 30 40 50 60 pF1KE4 MHNFEEELTCPICYSIFEDPRVLPCSHTFCRNCLENILQASGNFYIWRPLRIPLKCPNCR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 MHNFEEELTCPICYSIFEDPRVLPCSHTFCRNCLENILQASGNFYIWRPLRIPLKCPNCR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 SITEIAPTGIESLPVNFALRAIIEKYQQEDHPDIVTCPEHYRQPLNVYCLLDKKLVCGHC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 SITEIAPTGIESLPVNFALRAIIEKYQQEDHPDIVTCPEHYRQPLNVYCLLDKKLVCGHC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 LTIGQHHGHPIDDLQSAYLKEKDTPQKLLEQLTDTHWTDLTHLIEKLKEQKSHSEKMIQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 LTIGQHHGHPIDDLQSAYLKEKDTPQKLLEQLTDTHWTDLTHLIEKLKEQKSHSEKMIQG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 DKEAVLQYFKELNDTLEQKKKSFLTALCDVGNLINQEYTPQIERMKEIREQQLELMALTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 DKEAVLQYFKELNDTLEQKKKSFLTALCDVGNLINQEYTPQIERMKEIREQQLELMALTI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 SLQEESPLKFLEKVDDVRQHVQILKQRPLPEVQPVEIYPRVSKILKEEWSRTEIGQIKNV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 SLQEESPLKFLEKVDDVRQHVQILKQRPLPEVQPVEIYPRVSKILKEEWSRTEIGQIKNV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 LIPKMKISPKRMSCSWPGKDEKEVEFLKILNIVVVTLISVILMSILFFNQHIITFLSEIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 LIPKMKISPKRMSCSWPGKDEKEVEFLKILNIVVVTLISVILMSILFFNQHIITFLSEIT 310 320 330 340 350 360 370 380 390 400 pF1KE4 LIWFSEASLSVYQSLSNSLHKVKNILCHIFYLLKEFVWKIVSH ::::::::::::::::::::::::::::::::::::::::::: CCDS31 LIWFSEASLSVYQSLSNSLHKVKNILCHIFYLLKEFVWKIVSH 370 380 390 400 >>CCDS9423.1 TRIM13 gene_id:10206|Hs108|chr13 (407 aa) initn: 640 init1: 244 opt: 724 Z-score: 589.4 bits: 118.0 E(32554): 1.6e-26 Smith-Waterman score: 724; 34.3% identity (70.6% similar) in 306 aa overlap (1-304:1-301) 10 20 30 40 50 60 pF1KE4 MHNFEEELTCPICYSIFEDPRVLPCSHTFCRNCLENILQASGNFYIWRPLRIPLKCPNCR :. .::.:::::: :.:.:::::::::.::..:::.::..: .::: :.:::.:: CCDS94 MELLEEDLTCPICCSLFDDPRVLPCSHNFCKKCLEGILEGSVRNSLWRP--APFKCPTCR 10 20 30 40 50 70 80 90 100 110 pF1KE4 SITEIAPTGIESLPVNFALRAIIEKYQQ-EDHPDIVTCPEHYRQPLNVYCLLDKKLVCGH . : . :::.:: ::..:..:.:::.. . : . .: : ::::..:: : .:.:: CCDS94 K--ETSATGINSLQVNYSLKGIVEKYNKIKISPKMPVCKGHLGQPLNIFCLTDMQLICGI 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE4 CLTIGQHHGHPIDDLQSAYLKEKDTPQKLLEQLTDTHWTDLTHLIEKLKEQKSHSEKMIQ : : :.: : . ....:: .:.:. ..:.... . : .. :. .: .: ... CCDS94 CATRGEHTKHVFCSIEDAYAQERDAFESLFQSFETWRRGDALSRLDTLETSKRKSLQLLT 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE4 GDKEAVLQYFKELNDTLEQKKKSFLTALCDVGNLINQEYTPQIERMKEIREQQLELMALT :.. : ..:..:. ::.:::. .:. . . . : : :.:.... : ..: . .. CCDS94 KDSDKVKEFFEKLQHTLDQKKNEILSDFETMKLAVMQAYDPEINKLNTILQEQRMAFNIA 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE4 ISLQEES-PLKFLEKVDDVRQHVQILKQRPLPEVQPVEIYPRVSKILKEEWSRTEIGQIK .... : :. ::..... :......:. ::: . . : .... .: .. .. CCDS94 EAFKDVSEPIVFLQQMQEFREKIKVIKETPLPP-SNLPASPLMKNFDTSQWEDIKLVDVD 240 250 260 270 280 290 300 310 320 330 340 350 pF1KE4 NVLIPKMKISPKRMSCSWPGKDEKEVEFLKILNIVVVTLISVILMSILFFNQHIITFLSE .. .:. CCDS94 KLSLPQDTGTFISKIPWSFYKLFLLILLLGLVIVFGPTMFLEWSLFDDLATWKGCLSNFS 300 310 320 330 340 350 >>CCDS41888.1 TRIM13 gene_id:10206|Hs108|chr13 (410 aa) initn: 640 init1: 244 opt: 724 Z-score: 589.4 bits: 118.0 E(32554): 1.7e-26 Smith-Waterman score: 724; 34.3% identity (70.6% similar) in 306 aa overlap (1-304:4-304) 10 20 30 40 50 pF1KE4 MHNFEEELTCPICYSIFEDPRVLPCSHTFCRNCLENILQASGNFYIWRPLRIPLKCP :. .::.:::::: :.:.:::::::::.::..:::.::..: .::: :.::: CCDS41 MDVMELLEEDLTCPICCSLFDDPRVLPCSHNFCKKCLEGILEGSVRNSLWRP--APFKCP 10 20 30 40 50 60 70 80 90 100 110 pF1KE4 NCRSITEIAPTGIESLPVNFALRAIIEKYQQ-EDHPDIVTCPEHYRQPLNVYCLLDKKLV .::. : . :::.:: ::..:..:.:::.. . : . .: : ::::..:: : .:. CCDS41 TCRK--ETSATGINSLQVNYSLKGIVEKYNKIKISPKMPVCKGHLGQPLNIFCLTDMQLI 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE4 CGHCLTIGQHHGHPIDDLQSAYLKEKDTPQKLLEQLTDTHWTDLTHLIEKLKEQKSHSEK :: : : :.: : . ....:: .:.:. ..:.... . : .. :. .: .: . CCDS41 CGICATRGEHTKHVFCSIEDAYAQERDAFESLFQSFETWRRGDALSRLDTLETSKRKSLQ 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE4 MIQGDKEAVLQYFKELNDTLEQKKKSFLTALCDVGNLINQEYTPQIERMKEIREQQLELM .. :.. : ..:..:. ::.:::. .:. . . . : : :.:.... : ..: . CCDS41 LLTKDSDKVKEFFEKLQHTLDQKKNEILSDFETMKLAVMQAYDPEINKLNTILQEQRMAF 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE4 ALTISLQEES-PLKFLEKVDDVRQHVQILKQRPLPEVQPVEIYPRVSKILKEEWSRTEIG .. .... : :. ::..... :......:. ::: . . : .... .: .. CCDS41 NIAEAFKDVSEPIVFLQQMQEFREKIKVIKETPLPP-SNLPASPLMKNFDTSQWEDIKLV 240 250 260 270 280 290 300 310 320 330 340 350 pF1KE4 QIKNVLIPKMKISPKRMSCSWPGKDEKEVEFLKILNIVVVTLISVILMSILFFNQHIITF .. .. .:. CCDS41 DVDKLSLPQDTGTFISKIPWSFYKLFLLILLLGLVIVFGPTMFLEWSLFDDLATWKGCLS 300 310 320 330 340 350 403 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 04:12:29 2016 done: Sun Nov 6 04:12:29 2016 Total Scan time: 2.730 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]