FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4205, 723 aa
  1>>>pF1KE4205 723 - 723 aa - 723 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.1837+/-0.00128; mu= 2.0393+/- 0.077
 mean_var=210.0109+/-42.278, 0's: 0 Z-trim(107.6): 85  B-trim: 36 in 1/54
 Lambda= 0.088502
 statistics sampled from 9615 (9689) to 9615 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.645), E-opt: 0.2 (0.298), width:  16
 Scan time:  3.720

The best scores are:                                      opt bits E(32554)
CCDS3113.1 TRIM42 gene_id:287015|Hs108|chr3        ( 723) 5108 665.8 6.4e-191


>>CCDS3113.1 TRIM42 gene_id:287015|Hs108|chr3             (723 aa)
 initn: 5108 init1: 5108 opt: 5108  Z-score: 3541.1  bits: 665.8 E(32554): 6.4e-191
Smith-Waterman score: 5108; 99.9% identity (100.0% similar) in 723 aa overlap (1-723:1-723)

               10        20        30        40        50        60
pF1KE4 METAMCVCCPCCTWQRCCPQLCSCLCCKFIFTSERNCTCFPCPYKDERNCQFCHCTCSES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 METAMCVCCPCCTWQRCCPQLCSCLCCKFIFTSERNCTCFPCPYKDERNCQFCHCTCSES
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 PNCHWCCCSWANDPNCKCCCTASSNLNCYYYESRCCRNTIITFHKGRLRSIHTSSKTALR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PNCHWCCCSWANDPNCKCCCTASSNLNCYYYESRCCRNTIITFHKGRLRSIHTSSKTALR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 TGSSDTQVDEVKSIPANSHLVNHLNCPMCSRLRLHSFMLPCNHSLCEKCLRQLQKHAEVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 TGSSDTQVDEVKSIPANSHLVNHLNCPMCSRLRLHSFMLPCNHSLCEKCLRQLQKHAEVT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 ENFFILICPVCDRSHCMPYSNKMQLPENYLHGRLTKRYMQEHGYLKWRFDRSSGPILCQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ENFFILICPVCDRSHCMPYSNKMQLPENYLHGRLTKRYMQEHGYLKWRFDRSSGPILCQV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 CRNRRIAYKRCITCRLNLCNDCLKAFHSDVAMQDHVFVDTSAEEQDEKICIHHPSSRIIE
       :::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 CRNKRIAYKRCITCRLNLCNDCLKAFHSDVAMQDHVFVDTSAEEQDEKICIHHPSSRIIE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 YCRNDNKLLCTFCKFSFHNGHDTISLIDACSERAASLFSAIAKFKAVRYEIDNDLMEFNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 YCRNDNKLLCTFCKFSFHNGHDTISLIDACSERAASLFSAIAKFKAVRYEIDNDLMEFNI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 LKNSFKADKEAKRKEIRNGFLKLRSILQEKEKIIMEQIENLEVSRQKEIEKYVYVTTMKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LKNSFKADKEAKRKEIRNGFLKLRSILQEKEKIIMEQIENLEVSRQKEIEKYVYVTTMKV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE4 NEMDGLIAYSKEALKETGQVAFLQSAKILVDQIEDGIQTTYRPDPQLRLHSINYVPLDFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NEMDGLIAYSKEALKETGQVAFLQSAKILVDQIEDGIQTTYRPDPQLRLHSINYVPLDFV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE4 ELSSAIHELFPTGPKKVRSSGDSLPSPYPVHSETMIARKVTFSTHSLGNQHIYQRSSSML
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ELSSAIHELFPTGPKKVRSSGDSLPSPYPVHSETMIARKVTFSTHSLGNQHIYQRSSSML
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE4 SFSNTDKKAKVGLEACGRAQSATPAKPTDGLYTYWSAGADSQSVQNSSSFHNWYSFNDGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SFSNTDKKAKVGLEACGRAQSATPAKPTDGLYTYWSAGADSQSVQNSSSFHNWYSFNDGS
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE4 VKTPGPIVIYQTLVYPRAAKVYWTCPAEDVDSFEMEFYEVITSPPNNVQMELCGQIRDIM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VKTPGPIVIYQTLVYPRAAKVYWTCPAEDVDSFEMEFYEVITSPPNNVQMELCGQIRDIM
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE4 QQNLELHNLTPNTEYVFKVRAINDNGPGQWSDICKVVTPDGHGKNRAKWGLLKNIQSALQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QQNLELHNLTPNTEYVFKVRAINDNGPGQWSDICKVVTPDGHGKNRAKWGLLKNIQSALQ
              670       680       690       700       710       720

          
pF1KE4 KHF
       :::
CCDS31 KHF
          




723 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 03:21:19 2016 done: Sun Nov  6 03:21:20 2016
 Total Scan time:  3.720 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]