FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6684, 340 aa 1>>>pF1KE6684 340 - 340 aa - 340 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5449+/-0.000824; mu= 14.1616+/- 0.049 mean_var=61.7324+/-12.293, 0's: 0 Z-trim(106.7): 21 B-trim: 0 in 0/48 Lambda= 0.163237 statistics sampled from 9142 (9149) to 9142 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.281), width: 16 Scan time: 1.830 The best scores are: opt bits E(32554) CCDS3097.1 A4GNT gene_id:51146|Hs108|chr3 ( 340) 2358 563.8 6.9e-161 CCDS14041.1 A4GALT gene_id:53947|Hs108|chr22 ( 353) 716 177.2 1.8e-44 >>CCDS3097.1 A4GNT gene_id:51146|Hs108|chr3 (340 aa) initn: 2358 init1: 2358 opt: 2358 Z-score: 3001.9 bits: 563.8 E(32554): 6.9e-161 Smith-Waterman score: 2358; 99.7% identity (99.7% similar) in 340 aa overlap (1-340:1-340) 10 20 30 40 50 60 pF1KE6 MRKELQLSLSVTLLLVCGFLYQFTLKSSCLFCLPSFKSHQGLEALLSHRRGIVFLETSER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 MRKELQLSLSVTLLLVCGFLYQFTLKSSCLFCLPSFKSHQGLEALLSHRRGIVFLETSER 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 MEPPHLVSCSVESAAKIYPEWPVVFFMKGLTDSTPMPSNSTYPAFSFLSAIDNVFLFPLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 MEPPHLVSCSVESAAKIYPEWPVVFFMKGLTDSTPMPSNSTYPAFSFLSAIDNVFLFPLD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 MKRLLEDTPLFSWYNQINASAERNWLHISSDASRLAIIWKYGGIYMDTDVISIRPIPEEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 MKRLLEDTPLFSWYNQINASAERNWLHISSDASRLAIIWKYGGIYMDTDVISIRPIPEEN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 FLAAQASRYSSNGIFGFLPHHPFLWECMENFVEHYNSDIWGNQGPELMTRMLRVWCKLED ::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::: CCDS30 FLAAQASRYSSNGIFGFLPHHPFLWECMENFVEHYNSAIWGNQGPELMTRMLRVWCKLED 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 FQEVSDLRCLNISFLHPQRFYPISYREWRRYYEVWDTEPSFNVSYALHLWNHMNQEGRAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 FQEVSDLRCLNISFLHPQRFYPISYREWRRYYEVWDTEPSFNVSYALHLWNHMNQEGRAV 250 260 270 280 290 300 310 320 330 340 pF1KE6 IRGSNTLVENLYRKHCPRTYRDLIKGPEGSVTGELGPGNK :::::::::::::::::::::::::::::::::::::::: CCDS30 IRGSNTLVENLYRKHCPRTYRDLIKGPEGSVTGELGPGNK 310 320 330 340 >>CCDS14041.1 A4GALT gene_id:53947|Hs108|chr22 (353 aa) initn: 597 init1: 254 opt: 716 Z-score: 911.8 bits: 177.2 E(32554): 1.8e-44 Smith-Waterman score: 716; 38.4% identity (66.7% similar) in 315 aa overlap (18-323:50-349) 10 20 30 40 pF1KE6 MRKELQLSLSVTLLLVCGFLYQFTLKSSC-LFCLPSFKSHQGLEALL : ::.. . : . :. :: . CCDS14 VCTLFIIGFKFTFFVSIMIYWHVVGEPKEKGQLYNLPAEIPCPTLTPPTPPSHGPTPG-- 20 30 40 50 60 70 50 60 70 80 90 100 pF1KE6 SHRRGIVFLETSERMEPPHLVSCSVESAAKIYPEWPVVFFMKGLTDSTPMPSNSTYP--- .: :::::.: .: : :::::::. .:: :. .:::: . :.. : CCDS14 ----NIFFLETSDRTNPNFLFMCSVESAARTHPESHVLVLMKGLPGG-----NASLPRHL 80 90 100 110 120 110 120 130 140 150 160 pF1KE6 AFSFLSAIDNVFLFPLDMKRLLEDTPLFSWYNQINASAERNWLHISSDASRLAIIWKYGG ..:.:: . :: ..:::...:..:::: .:: ... : : . :::::.:..::.:: CCDS14 GISLLSCFPNVQMLPLDLRELFRDTPLADWYAAVQGRWEPYLLPVLSDASRIALMWKFGG 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE6 IYMDTDVISIRPIPE-ENFLAAQASRYSSNGIF-GFLPHHPFLWECMENFVEHYNSDIWG ::.::: : .. . . : :..: ::: :: : .: .: :. ::..::.:::. ::: CCDS14 IYLDTDFIVLKNLRNLTNVLGTQ-SRYVLNGAFLAFERRHEFMALCMRDFVDHYNGWIWG 190 200 210 220 230 240 230 240 250 260 270 pF1KE6 NQGPELMTRMLRVWCKLEDFQEVSDLRCLNISFLHPQRFYPISYREWRRYYEVWDTE--P .:::.:.::... ::..... : : ... : :. :::: ...:..:.: . : : CCDS14 HQGPQLLTRVFKKWCSIRSLAESRA--CRGVTTLPPEAFYPIPWQDWKKYFEDINPEELP 250 260 270 280 290 300 280 290 300 310 320 330 pF1KE6 SF-NVSYALHLWNHMNQEGRAVIRGSNTLVENLYRKHCPRTYRDLIKGPEGSVTGELGPG . ...::.:.::. .: : : .:. .:. ..:: :.. . CCDS14 RLLSATYAVHVWNKKSQ-GTRFEATSRALLAQLHARYCPTTHEAMKMYL 310 320 330 340 350 340 pF1KE6 NK 340 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 15:23:42 2016 done: Tue Nov 8 15:23:43 2016 Total Scan time: 1.830 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]