(Circular) (Six-base) MAPSORT of: pFN21AE5423.seq Check: 4064 from: 1 to: 5749 pFN21AE5423 5749 bp With 182 enzymes: SgfI * January 30, 2014 17:19 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3559 278 Size: 53 83 186 936 2023 2468 Fragments arranged by size: 2468 2023 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2053 3092 1937 Size: 116 1039 4594 Fragments arranged by size: 4594 1039 116 Acc65I G'GTAC_C Cuts at: 3070 3070 Size: 5749 AclI AA'CG_TT Cuts at: 1563 3876 4249 1563 Size: 2313 373 3063 Fragments arranged by size: 3063 2313 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2187 2354 3812 5196 5464 1632 Size: 555 167 1458 1384 268 1917 Fragments arranged by size: 1917 1458 1384 555 268 167 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5552 AflIII A'CryG_T Cuts at: 1203 3012 4648 5625 1203 Size: 1809 1636 977 1327 Fragments arranged by size: 1809 1636 1327 977 AgeI A'CCGG_T Cuts at: 4580 4580 Size: 5749 AhdI GACnn_n'nnGTC Cuts at: 4478 4478 Size: 5749 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5749 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5749 AlwNI CAG_nnn'CTG Cuts at: 2047 2757 3492 5064 2047 Size: 710 735 1572 2732 Fragments arranged by size: 2732 1572 735 710 ApaI G_GGCC'C Cuts at: 2087 2087 Size: 5749 ApaLI G'TGCA_C Cuts at: 3806 4962 3806 Size: 1156 4593 ApoI r'AATT_y Cuts at: 1493 2492 3058 3284 3436 5545 1493 Size: 999 566 226 152 2109 1697 Fragments arranged by size: 2109 1697 999 566 226 152 AseI AT'TA_AT Cuts at: 160 1032 4303 160 Size: 872 3271 1606 Fragments arranged by size: 3271 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5749 AvaI C'yCGr_G Cuts at: 1870 1943 2057 2086 3074 1870 Size: 73 114 29 988 4545 Fragments arranged by size: 4545 988 114 73 29 BamHI G'GATC_C Cuts at: 3079 3446 3079 Size: 367 5382 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2036 3070 4525 618 Size: 325 217 627 249 1034 1455 1842 Fragments arranged by size: 1842 1455 1034 627 325 249 217 BanII G_rGCy'C Cuts at: 1391 2087 3068 1391 Size: 696 981 4072 Fragments arranged by size: 4072 981 696 BbeI G_GCGC'C Cuts at: 2040 2040 Size: 5749 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2117 928 Size: 971 218 4560 Fragments arranged by size: 4560 971 218 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 1987 2021 3940 3974 1903 Size: 34 50 34 1919 34 3678 Fragments arranged by size: 3678 1919 50 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3641 4851 3641 Size: 1210 4539 BclI T'GATC_A Cuts at: 1548 1548 Size: 5749 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4360 136 Size: 107 122 71 631 605 2688 1525 Fragments arranged by size: 2688 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5744 5744 Size: 5749 BlpI GC'TnA_GC Cuts at: 3166 3166 Size: 5749 Bme1580I G_kGCm'C Cuts at: 1790 2087 3810 4966 1790 Size: 297 1723 1156 2573 Fragments arranged by size: 2573 1723 1156 297 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5749 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3480 4438 442 Size: 416 53 83 399 24 2063 958 1753 Fragments arranged by size: 2063 1753 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5749 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2745 4409 1239 Size: 1506 1664 2579 Fragments arranged by size: 2579 1664 1506 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3874 4739 5037 3874 Size: 865 298 4586 Fragments arranged by size: 4586 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2203 2713 4412 882 Size: 617 704 510 1699 2219 Fragments arranged by size: 2219 1699 704 617 510 BsaAI yAC'GTr Cuts at: 493 1204 3540 493 Size: 711 2336 2702 Fragments arranged by size: 2702 2336 711 BsaBI GATnn'nnATC Cuts at: 2157 5743 2157 Size: 3586 2163 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2037 3556 3938 4573 Size: 53 83 186 936 504 1519 382 635 Cuts at: 4573 275 Size: 1451 Fragments arranged by size: 1519 1451 936 635 504 382 186 83 53 BsaWI w'CCGG_w Cuts at: 4182 4580 4854 5001 5412 4182 Size: 398 274 147 411 4519 Fragments arranged by size: 4519 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5524 Fragments arranged by size: 5524 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2568 1186 Size: 1382 4367 BseYI C'CCAG_C Cuts at: 2047 2314 4952 5448 2047 Size: 267 2638 496 2348 Fragments arranged by size: 2638 2348 496 267 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 5176 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3199 3960 4988 1540 Size: 275 186 1198 761 1028 2301 Fragments arranged by size: 2301 1198 1028 761 275 186 BsiHKAI G_wGCw'C Cuts at: 3810 3895 4966 3810 Size: 85 1071 4593 Fragments arranged by size: 4593 1071 85 BsmI GAATG_Cn' Cuts at: 3260 3353 3260 Size: 93 5656 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2087 3068 3810 3895 4966 1391 Size: 399 297 981 742 85 1071 2174 Fragments arranged by size: 2174 1071 981 742 399 297 85 BspEI T'CCGG_A Cuts at: 5412 5412 Size: 5749 BspHI T'CATG_A Cuts at: 2658 3638 5368 2658 Size: 980 1730 3039 Fragments arranged by size: 3039 1730 980 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2020 3104 844 Size: 1176 1084 3489 Fragments arranged by size: 3489 1176 1084 BsrBI CCG'CTC Cuts at: 1394 1823 3636 1394 Size: 429 1813 3507 Fragments arranged by size: 3507 1813 429 BsrDI GCAATG_nn' Cuts at: 65 1248 4244 4418 65 Size: 1183 2996 174 1396 Fragments arranged by size: 2996 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4393 4580 1700 Size: 110 2583 187 2869 Fragments arranged by size: 2869 2583 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5749 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5749 BssSI C'ACGA_G Cuts at: 3809 4821 3809 Size: 1012 4737 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5749 BstBI TT'CG_AA Cuts at: 4553 4553 Size: 5749 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5749 BstYI r'GATC_y Cuts at: 1972 2929 3079 3446 3831 3848 5300 5386 5398 Size: 957 150 367 385 17 1452 86 12 Cuts at: 5398 5744 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 957 385 367 346 150 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2255 513 Size: 552 1190 4007 Fragments arranged by size: 4007 1190 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 5010 Fragments arranged by size: 5010 683 56 BtsI GCAGTG_nn' Cuts at: 3265 4059 4079 3265 Size: 794 20 4935 Fragments arranged by size: 4935 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5749 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5714 DraI TTT'AAA Cuts at: 2677 3053 2677 Size: 376 5373 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 2387 4756 809 Size: 507 1071 2369 1802 Fragments arranged by size: 2369 1802 1071 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 3196 4085 5714 Size: 54 1425 50 275 18 1366 889 1629 Cuts at: 5714 8 Size: 43 Fragments arranged by size: 1629 1425 1366 889 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3196 1537 Size: 275 1384 4090 Fragments arranged by size: 4090 1384 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2973 3679 1353 Size: 1620 706 3423 Fragments arranged by size: 3423 1620 706 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4336 4710 4856 387 Size: 1064 138 2747 374 146 1280 Fragments arranged by size: 2747 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2187 2354 2745 3812 4409 5196 5464 Size: 393 555 167 391 1067 597 787 268 Cuts at: 5464 1239 Size: 1524 Fragments arranged by size: 1524 1067 787 597 555 393 391 268 167 EcoRI G'AATT_C Cuts at: 3058 3436 3058 Size: 378 5371 FspI TGC'GCA Cuts at: 4255 4255 Size: 5749 HaeII r_GCGC'y Cuts at: 1678 2040 4896 1678 Size: 362 2856 2531 Fragments arranged by size: 2856 2531 362 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 4390 4422 4464 4496 1373 Size: 32 135 32 2818 32 42 32 2626 Fragments arranged by size: 2818 2626 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2054 3093 3339 669 Size: 988 281 116 1039 246 3079 Fragments arranged by size: 3079 1039 988 281 246 116 HindIII A'AGCT_T Cuts at: 748 748 Size: 5749 HpaI GTT'AAC Cuts at: 3339 3339 Size: 5749 KasI G'GCGC_C Cuts at: 2036 2036 Size: 5749 KpnI G_GTAC'C Cuts at: 3074 3074 Size: 5749 MfeI C'AATT_G Cuts at: 3348 3348 Size: 5749 MluI A'CGCG_T Cuts at: 5625 5625 Size: 5749 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 1994 4863 5047 1305 Size: 689 2869 184 2007 Fragments arranged by size: 2869 2007 689 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3927 Fragments arranged by size: 3927 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3707 4066 4225 518 Size: 648 2541 359 159 2042 Fragments arranged by size: 2541 2042 648 359 159 MspA1I CmG'CkG Cuts at: 1606 3165 3842 4990 5235 1606 Size: 1559 677 1148 245 2120 Fragments arranged by size: 2120 1559 1148 677 245 NarI GG'CG_CC Cuts at: 2037 2037 Size: 5749 NcoI C'CATG_G Cuts at: 513 1065 2255 513 Size: 552 1190 4007 Fragments arranged by size: 4007 1190 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5749 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5749 NotI GC'GGCC_GC Cuts at: 3196 3196 Size: 5749 NspI r_CATG'y Cuts at: 1132 1229 2357 3107 4652 1132 Size: 97 1128 750 1545 2229 Fragments arranged by size: 2229 1545 1128 750 97 PasI CC'CwG_GG Cuts at: 1348 2080 1348 Size: 732 5017 PciI A'CATG_T Cuts at: 4648 4648 Size: 5749 PflMI CCAn_nnn'nTGG Cuts at: 1108 2047 1108 Size: 939 4810 PfoI T'CCnGG_A Cuts at: 2602 2602 Size: 5749 PmeI GTTT'AAAC Cuts at: 3053 3053 Size: 5749 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3818 3850 5331 5363 3818 Size: 32 1481 32 4204 Fragments arranged by size: 4204 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 2030 1613 Size: 417 5332 PsiI TTA'TAA Cuts at: 3319 3319 Size: 5749 PspOMI G'GGCC_C Cuts at: 2083 2083 Size: 5749 PstI C_TGCA'G Cuts at: 830 3101 830 Size: 2271 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5749 SalI G'TCGA_C Cuts at: 1936 2052 3091 1936 Size: 116 1039 4594 Fragments arranged by size: 4594 1039 116 SbfI CC_TGCA'GG Cuts at: 3101 3101 Size: 5749 ScaI AGT'ACT Cuts at: 3997 5709 3997 Size: 1712 4037 SexAI A'CCwGG_T Cuts at: 2278 2278 Size: 5749 SfcI C'TryA_G Cuts at: 826 1045 2442 3097 4232 4913 5104 826 Size: 219 1397 655 1135 681 191 1471 Fragments arranged by size: 1471 1397 1135 681 655 219 191 SfoI GGC'GCC Cuts at: 2038 2038 Size: 5749 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5749 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5749 SmaI CCC'GGG Cuts at: 1872 2088 3076 1872 Size: 216 988 4545 Fragments arranged by size: 4545 988 216 SmlI C'TyrA_G Cuts at: 820 1017 1943 3853 4754 5016 820 Size: 197 926 1910 901 262 1553 Fragments arranged by size: 1910 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3540 493 Size: 3047 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5749 SphI G_CATG'C Cuts at: 1132 3107 1132 Size: 1975 3774 SspI AAT'ATT Cuts at: 5 52 3673 5 Size: 47 3621 2081 Fragments arranged by size: 3621 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5749 StyI C'CwwG_G Cuts at: 513 1065 2255 2270 2337 3188 513 Size: 552 1190 15 67 851 3074 Fragments arranged by size: 3074 1190 851 552 67 15 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2060 3776 3793 3946 4131 4576 325 Size: 1255 480 1716 17 153 185 445 1498 Fragments arranged by size: 1716 1498 1255 480 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3995 5707 96 Size: 274 80 33 51 1443 2018 1712 138 Fragments arranged by size: 2018 1712 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2598 2630 2805 2837 5709 5741 2598 Size: 32 175 32 2872 32 2606 Fragments arranged by size: 2872 2606 175 32 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5749 XbaI T'CTAG_A Cuts at: 3085 3085 Size: 5749 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2720 2720 Size: 5749 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5749 XmaI C'CCGG_G Cuts at: 1870 2086 3074 1870 Size: 216 988 4545 Fragments arranged by size: 4545 988 216 XmnI GAAnn'nnTTC Cuts at: 3878 3878 Size: 5749 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3557 276 Size: 53 83 186 936 2023 2468 Fragments arranged by size: 2468 2023 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoRI FspI HaeII Hin4I HincII HindIII HpaI KasI KpnI MfeI MluI MmeI MscI MslI MspA1I NarI NcoI NdeI NheI NotI NspI PasI PciI PflMI PfoI PmeI PpiI PshAI PsiI PspOMI PstI PvuI SalI SbfI ScaI SexAI SfcI SfoI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI AscI AvrII BaeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoO109I EcoRV FalI FseI FspAI NaeI NgoMIV NruI NsiI PacI PmlI PpuMI PspXI PsrI PvuII RsrII SacI SacII SanDI SapI SfiI SrfI SwaI