FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5423, 348 aa 1>>>pF1KE5423 348 - 348 aa - 348 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4061+/-0.000316; mu= 15.7620+/- 0.020 mean_var=76.0191+/-15.175, 0's: 0 Z-trim(116.9): 7 B-trim: 368 in 1/57 Lambda= 0.147100 statistics sampled from 28470 (28474) to 28470 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.334), width: 16 Scan time: 7.050 The best scores are: opt bits E(85289) NP_009139 (OMIM: 607118,614582) 39S ribosomal prot ( 348) 2438 526.6 3e-149 >>NP_009139 (OMIM: 607118,614582) 39S ribosomal protein (348 aa) initn: 2438 init1: 2438 opt: 2438 Z-score: 2800.4 bits: 526.6 E(85289): 3e-149 Smith-Waterman score: 2438; 100.0% identity (100.0% similar) in 348 aa overlap (1-348:1-348) 10 20 30 40 50 60 pF1KE5 MPGWRLLTQVGAQVLGRLGDGLGAALGPGNRTHIWLFVRGLHGKSGTWWDEHLSEENVPF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_009 MPGWRLLTQVGAQVLGRLGDGLGAALGPGNRTHIWLFVRGLHGKSGTWWDEHLSEENVPF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 IKQLVSDEDKAQLASKLCPLKDEPWPIHPWEPGSFRVGLIALKLGMMPLWTKDGQKHVVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_009 IKQLVSDEDKAQLASKLCPLKDEPWPIHPWEPGSFRVGLIALKLGMMPLWTKDGQKHVVT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 LLQVQDCHVLKYTSKENCNGKMATLSVGGKTVSRFRKATSILEFYRELGLPPKQTVKIFN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_009 LLQVQDCHVLKYTSKENCNGKMATLSVGGKTVSRFRKATSILEFYRELGLPPKQTVKIFN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 ITDNAAIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_009 ITDNAAIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 GAVATGDIGRVWPGTKMPGKMGNIYRTEYGLKVWRINTKHNIIYVNGSVPGHKNCLVKVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_009 GAVATGDIGRVWPGTKMPGKMGNIYRTEYGLKVWRINTKHNIIYVNGSVPGHKNCLVKVK 250 260 270 280 290 300 310 320 330 340 pF1KE5 DSKLPAYKDLGKNLPFPTYFPDGDEEELPEDLYDENVCQPGAPSITFA :::::::::::::::::::::::::::::::::::::::::::::::: NP_009 DSKLPAYKDLGKNLPFPTYFPDGDEEELPEDLYDENVCQPGAPSITFA 310 320 330 340 348 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 00:36:59 2016 done: Tue Nov 8 00:37:00 2016 Total Scan time: 7.050 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]