FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9464, 373 aa 1>>>pF1KE9464 373 - 373 aa - 373 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7969+/-0.000764; mu= 19.5349+/- 0.046 mean_var=61.1408+/-12.521, 0's: 0 Z-trim(107.4): 15 B-trim: 0 in 0/51 Lambda= 0.164024 statistics sampled from 9576 (9582) to 9576 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.294), width: 16 Scan time: 2.900 The best scores are: opt bits E(32554) CCDS3042.1 TPRA1 gene_id:131601|Hs108|chr3 ( 373) 2416 580.1 1.1e-165 CCDS46899.1 TPRA1 gene_id:131601|Hs108|chr3 ( 293) 1298 315.4 4e-86 >>CCDS3042.1 TPRA1 gene_id:131601|Hs108|chr3 (373 aa) initn: 2416 init1: 2416 opt: 2416 Z-score: 3088.0 bits: 580.1 E(32554): 1.1e-165 Smith-Waterman score: 2416; 100.0% identity (100.0% similar) in 373 aa overlap (1-373:1-373) 10 20 30 40 50 60 pF1KE9 MDTLEEVTWANGSTALPPPLAPNISVPHRCLLLLYEDIGTSRVRYWDLLLLIPNVLFLIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 MDTLEEVTWANGSTALPPPLAPNISVPHRCLLLLYEDIGTSRVRYWDLLLLIPNVLFLIF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 LLWKLPSARAKIRITSSPIFITFYILVFVVALVGIARAVVSMTVSTSNAATVADKILWEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 LLWKLPSARAKIRITSSPIFITFYILVFVVALVGIARAVVSMTVSTSNAATVADKILWEI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 TRFFLLAIELSVIILGLAFGHLESKSSIKRVLAITTVLSLAYSVTQGTLEILYPDAHLSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 TRFFLLAIELSVIILGLAFGHLESKSSIKRVLAITTVLSLAYSVTQGTLEILYPDAHLSA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 EDFNIYGHGGRQFWLVSSCFFFLVYSLVVILPKTPLKERISLPSRRSFYVYAGILALLNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 EDFNIYGHGGRQFWLVSSCFFFLVYSLVVILPKTPLKERISLPSRRSFYVYAGILALLNL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE9 LQGLGSVLLCFDIIEGLCCVDATTFLYFSFFAPLIYVAFLRGFFGSEPKILFSYKCQVDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 LQGLGSVLLCFDIIEGLCCVDATTFLYFSFFAPLIYVAFLRGFFGSEPKILFSYKCQVDE 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE9 TEEPDVHLPQPYAVARREGLEAAGAAGASAASYSSTQFDSAGGVAYLDDIASMPCHTGSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 TEEPDVHLPQPYAVARREGLEAAGAAGASAASYSSTQFDSAGGVAYLDDIASMPCHTGSI 310 320 330 340 350 360 370 pF1KE9 NSTDSERWKAINA ::::::::::::: CCDS30 NSTDSERWKAINA 370 >>CCDS46899.1 TPRA1 gene_id:131601|Hs108|chr3 (293 aa) initn: 1320 init1: 1298 opt: 1298 Z-score: 1659.7 bits: 315.4 E(32554): 4e-86 Smith-Waterman score: 1298; 99.5% identity (100.0% similar) in 204 aa overlap (1-204:1-204) 10 20 30 40 50 60 pF1KE9 MDTLEEVTWANGSTALPPPLAPNISVPHRCLLLLYEDIGTSRVRYWDLLLLIPNVLFLIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 MDTLEEVTWANGSTALPPPLAPNISVPHRCLLLLYEDIGTSRVRYWDLLLLIPNVLFLIF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 LLWKLPSARAKIRITSSPIFITFYILVFVVALVGIARAVVSMTVSTSNAATVADKILWEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 LLWKLPSARAKIRITSSPIFITFYILVFVVALVGIARAVVSMTVSTSNAATVADKILWEI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 TRFFLLAIELSVIILGLAFGHLESKSSIKRVLAITTVLSLAYSVTQGTLEILYPDAHLSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 TRFFLLAIELSVIILGLAFGHLESKSSIKRVLAITTVLSLAYSVTQGTLEILYPDAHLSA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 EDFNIYGHGGRQFWLVSSCFFFLVYSLVVILPKTPLKERISLPSRRSFYVYAGILALLNL :::::::::::::::::::::::. CCDS46 EDFNIYGHGGRQFWLVSSCFFFLLCRCHNLPVLQLLRSAHLRGFPPGLLRLGAQDPLLLQ 190 200 210 220 230 240 373 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 17:41:51 2016 done: Sun Nov 6 17:41:52 2016 Total Scan time: 2.900 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]