FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6378, 307 aa 1>>>pF1KE6378 307 - 307 aa - 307 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5707+/-0.000452; mu= 13.8896+/- 0.028 mean_var=63.8705+/-13.167, 0's: 0 Z-trim(108.8): 42 B-trim: 28 in 1/48 Lambda= 0.160481 statistics sampled from 16880 (16913) to 16880 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.575), E-opt: 0.2 (0.198), width: 16 Scan time: 6.350 The best scores are: opt bits E(85289) XP_011510978 (OMIM: 612442) PREDICTED: vesicle-tra ( 307) 2054 484.6 1e-136 XP_011510975 (OMIM: 612442) PREDICTED: vesicle-tra ( 307) 2054 484.6 1e-136 XP_011510977 (OMIM: 612442) PREDICTED: vesicle-tra ( 307) 2054 484.6 1e-136 NP_036562 (OMIM: 612442) vesicle-trafficking prote ( 307) 2054 484.6 1e-136 NP_116752 (OMIM: 604028) vesicle-trafficking prote ( 303) 757 184.4 2.5e-46 XP_011532514 (OMIM: 604028) PREDICTED: vesicle-tra ( 303) 757 184.4 2.5e-46 XP_005265591 (OMIM: 604028) PREDICTED: vesicle-tra ( 233) 582 143.8 3.2e-34 XP_005265592 (OMIM: 604028) PREDICTED: vesicle-tra ( 233) 582 143.8 3.2e-34 XP_005265590 (OMIM: 604028) PREDICTED: vesicle-tra ( 233) 582 143.8 3.2e-34 NP_004197 (OMIM: 604028) vesicle-trafficking prote ( 250) 554 137.3 3e-32 NP_001188501 (OMIM: 604028) vesicle-trafficking pr ( 250) 554 137.3 3e-32 NP_001188513 (OMIM: 604028) vesicle-trafficking pr ( 228) 510 127.1 3.2e-29 XP_016862928 (OMIM: 604028) PREDICTED: vesicle-tra ( 180) 379 96.8 3.5e-20 XP_016862927 (OMIM: 604028) PREDICTED: vesicle-tra ( 180) 379 96.8 3.5e-20 XP_016858345 (OMIM: 604029) PREDICTED: vesicle-tra ( 204) 350 90.1 4.1e-18 NP_004883 (OMIM: 604029) vesicle-trafficking prote ( 215) 350 90.1 4.3e-18 XP_016858346 (OMIM: 604029) PREDICTED: vesicle-tra ( 157) 213 58.3 1.2e-08 >>XP_011510978 (OMIM: 612442) PREDICTED: vesicle-traffic (307 aa) initn: 2054 init1: 2054 opt: 2054 Z-score: 2575.4 bits: 484.6 E(85289): 1e-136 Smith-Waterman score: 2054; 100.0% identity (100.0% similar) in 307 aa overlap (1-307:1-307) 10 20 30 40 50 60 pF1KE6 MSMILSASVIRVRDGLPLSASTDYEQSTGMQECRKYFKMLSRKLAQLPDRCTLKTGHYNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MSMILSASVIRVRDGLPLSASTDYEQSTGMQECRKYFKMLSRKLAQLPDRCTLKTGHYNI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 NFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFIQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 RTKQRYNNPRSLSTKINLSDMQTEIKLRPPYQISMCELGSANGVTSAFSVDCKGAGKISS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 RTKQRYNNPRSLSTKINLSDMQTEIKLRPPYQISMCELGSANGVTSAFSVDCKGAGKISS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 AHQRLEPATLSGIVGFILSLLCGALNLIRGFHAIESLLQSDGDDFNYIIAFFLGTAACLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 AHQRLEPATLSGIVGFILSLLCGALNLIRGFHAIESLLQSDGDDFNYIIAFFLGTAACLY 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 QCYLLVYYTGWRNVKSFLTFGLICLCNMYLYELRNLWQLFFHVTVGAFVTLQIWLRQAQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QCYLLVYYTGWRNVKSFLTFGLICLCNMYLYELRNLWQLFFHVTVGAFVTLQIWLRQAQG 250 260 270 280 290 300 pF1KE6 KAPDYDV ::::::: XP_011 KAPDYDV >>XP_011510975 (OMIM: 612442) PREDICTED: vesicle-traffic (307 aa) initn: 2054 init1: 2054 opt: 2054 Z-score: 2575.4 bits: 484.6 E(85289): 1e-136 Smith-Waterman score: 2054; 100.0% identity (100.0% similar) in 307 aa overlap (1-307:1-307) 10 20 30 40 50 60 pF1KE6 MSMILSASVIRVRDGLPLSASTDYEQSTGMQECRKYFKMLSRKLAQLPDRCTLKTGHYNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MSMILSASVIRVRDGLPLSASTDYEQSTGMQECRKYFKMLSRKLAQLPDRCTLKTGHYNI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 NFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFIQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 RTKQRYNNPRSLSTKINLSDMQTEIKLRPPYQISMCELGSANGVTSAFSVDCKGAGKISS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 RTKQRYNNPRSLSTKINLSDMQTEIKLRPPYQISMCELGSANGVTSAFSVDCKGAGKISS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 AHQRLEPATLSGIVGFILSLLCGALNLIRGFHAIESLLQSDGDDFNYIIAFFLGTAACLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 AHQRLEPATLSGIVGFILSLLCGALNLIRGFHAIESLLQSDGDDFNYIIAFFLGTAACLY 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 QCYLLVYYTGWRNVKSFLTFGLICLCNMYLYELRNLWQLFFHVTVGAFVTLQIWLRQAQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QCYLLVYYTGWRNVKSFLTFGLICLCNMYLYELRNLWQLFFHVTVGAFVTLQIWLRQAQG 250 260 270 280 290 300 pF1KE6 KAPDYDV ::::::: XP_011 KAPDYDV >>XP_011510977 (OMIM: 612442) PREDICTED: vesicle-traffic (307 aa) initn: 2054 init1: 2054 opt: 2054 Z-score: 2575.4 bits: 484.6 E(85289): 1e-136 Smith-Waterman score: 2054; 100.0% identity (100.0% similar) in 307 aa overlap (1-307:1-307) 10 20 30 40 50 60 pF1KE6 MSMILSASVIRVRDGLPLSASTDYEQSTGMQECRKYFKMLSRKLAQLPDRCTLKTGHYNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MSMILSASVIRVRDGLPLSASTDYEQSTGMQECRKYFKMLSRKLAQLPDRCTLKTGHYNI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 NFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFIQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 RTKQRYNNPRSLSTKINLSDMQTEIKLRPPYQISMCELGSANGVTSAFSVDCKGAGKISS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 RTKQRYNNPRSLSTKINLSDMQTEIKLRPPYQISMCELGSANGVTSAFSVDCKGAGKISS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 AHQRLEPATLSGIVGFILSLLCGALNLIRGFHAIESLLQSDGDDFNYIIAFFLGTAACLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 AHQRLEPATLSGIVGFILSLLCGALNLIRGFHAIESLLQSDGDDFNYIIAFFLGTAACLY 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 QCYLLVYYTGWRNVKSFLTFGLICLCNMYLYELRNLWQLFFHVTVGAFVTLQIWLRQAQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QCYLLVYYTGWRNVKSFLTFGLICLCNMYLYELRNLWQLFFHVTVGAFVTLQIWLRQAQG 250 260 270 280 290 300 pF1KE6 KAPDYDV ::::::: XP_011 KAPDYDV >>NP_036562 (OMIM: 612442) vesicle-trafficking protein S (307 aa) initn: 2054 init1: 2054 opt: 2054 Z-score: 2575.4 bits: 484.6 E(85289): 1e-136 Smith-Waterman score: 2054; 100.0% identity (100.0% similar) in 307 aa overlap (1-307:1-307) 10 20 30 40 50 60 pF1KE6 MSMILSASVIRVRDGLPLSASTDYEQSTGMQECRKYFKMLSRKLAQLPDRCTLKTGHYNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 MSMILSASVIRVRDGLPLSASTDYEQSTGMQECRKYFKMLSRKLAQLPDRCTLKTGHYNI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 NFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 NFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFIQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 RTKQRYNNPRSLSTKINLSDMQTEIKLRPPYQISMCELGSANGVTSAFSVDCKGAGKISS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 RTKQRYNNPRSLSTKINLSDMQTEIKLRPPYQISMCELGSANGVTSAFSVDCKGAGKISS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 AHQRLEPATLSGIVGFILSLLCGALNLIRGFHAIESLLQSDGDDFNYIIAFFLGTAACLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 AHQRLEPATLSGIVGFILSLLCGALNLIRGFHAIESLLQSDGDDFNYIIAFFLGTAACLY 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 QCYLLVYYTGWRNVKSFLTFGLICLCNMYLYELRNLWQLFFHVTVGAFVTLQIWLRQAQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_036 QCYLLVYYTGWRNVKSFLTFGLICLCNMYLYELRNLWQLFFHVTVGAFVTLQIWLRQAQG 250 260 270 280 290 300 pF1KE6 KAPDYDV ::::::: NP_036 KAPDYDV >>NP_116752 (OMIM: 604028) vesicle-trafficking protein S (303 aa) initn: 796 init1: 408 opt: 757 Z-score: 952.6 bits: 184.4 E(85289): 2.5e-46 Smith-Waterman score: 757; 40.8% identity (68.3% similar) in 309 aa overlap (1-307:1-303) 10 20 30 40 50 60 pF1KE6 MSMILSASVIRVRDGLPLSASTDYEQSTGMQECRKYFKMLSRKLAQLPDRCTLKTGHYNI ::.:. : :.:::::::::::::. .. . : :. .: :. .::: : : . . ..: NP_116 MSVIFFACVVRVRDGLPLSASTDFYHTQDFLEWRRRLKSLALRLAQYPGRGSAEGCDFSI 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 NFISSLG-VSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFI .: ::.: :. : .:. . : ..:: ::. : :: ..:. . : ::: :.:::..: NP_116 HF-SSFGDVACMAICSCQCPAAMAFCFLETLWWEFTASYDTTCIGLASRPYAFLEFDSII 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 QRTKQRYNNPRSLSTKINLSDMQTEIKLRPPYQISMCELGSANGVTSAFS-VDCKGAGKI :..: ..: : . . .: .: :.::.:: ... . :::: .. . . . : .. NP_116 QKVKWHFNYVSSSQMECSLEKIQEELKLQPPAVLTLEDTDVANGVMNGHTPMHLEPAPNF 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE6 SSAHQRLEPATLSGIVGFILSLLCGALNLIRGFHAIESLLQSDGDDFNYIIAFFLGTAAC :.::.: ::...::...:.::::::: : : :: .... :.::.. .:: NP_116 -----RMEPVTALGILSLILNIMCAALNLIRGVHLAEHSLQVAHEEIGNILAFLVPFVAC 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE6 LYQCYLLVYYTGWRNVKSFLTFGLICLCNMYLYELRNLWQLFFHVTVGAFVTLQIWLRQA ..:::: ..:. :..: : . .::: ::::. ::::::..::. :. . . :: :: NP_116 IFQCYLYLFYSPARTMKVVLMLLFICLGNMYLHGLRNLWQILFHIGVAFLSSYQILTRQL 240 250 260 270 280 290 300 pF1KE6 QGKAPDYDV : : : : NP_116 QEKQSDCGV 300 >>XP_011532514 (OMIM: 604028) PREDICTED: vesicle-traffic (303 aa) initn: 796 init1: 408 opt: 757 Z-score: 952.6 bits: 184.4 E(85289): 2.5e-46 Smith-Waterman score: 757; 40.8% identity (68.3% similar) in 309 aa overlap (1-307:1-303) 10 20 30 40 50 60 pF1KE6 MSMILSASVIRVRDGLPLSASTDYEQSTGMQECRKYFKMLSRKLAQLPDRCTLKTGHYNI ::.:. : :.:::::::::::::. .. . : :. .: :. .::: : : . . ..: XP_011 MSVIFFACVVRVRDGLPLSASTDFYHTQDFLEWRRRLKSLALRLAQYPGRGSAEGCDFSI 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 NFISSLG-VSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFI .: ::.: :. : .:. . : ..:: ::. : :: ..:. . : ::: :.:::..: XP_011 HF-SSFGDVACMAICSCQCPAAMAFCFLETLWWEFTASYDTTCIGLASRPYAFLEFDSII 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 QRTKQRYNNPRSLSTKINLSDMQTEIKLRPPYQISMCELGSANGVTSAFS-VDCKGAGKI :..: ..: : . . .: .: :.::.:: ... . :::: .. . . . : .. XP_011 QKVKWHFNYVSSSQMECSLEKIQEELKLQPPAVLTLEDTDVANGVMNGHTPMHLEPAPNF 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE6 SSAHQRLEPATLSGIVGFILSLLCGALNLIRGFHAIESLLQSDGDDFNYIIAFFLGTAAC :.::.: ::...::...:.::::::: : : :: .... :.::.. .:: XP_011 -----RMEPVTALGILSLILNIMCAALNLIRGVHLAEHSLQVAHEEIGNILAFLVPFVAC 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE6 LYQCYLLVYYTGWRNVKSFLTFGLICLCNMYLYELRNLWQLFFHVTVGAFVTLQIWLRQA ..:::: ..:. :..: : . .::: ::::. ::::::..::. :. . . :: :: XP_011 IFQCYLYLFYSPARTMKVVLMLLFICLGNMYLHGLRNLWQILFHIGVAFLSSYQILTRQL 240 250 260 270 280 290 300 pF1KE6 QGKAPDYDV : : : : XP_011 QEKQSDCGV 300 >>XP_005265591 (OMIM: 604028) PREDICTED: vesicle-traffic (233 aa) initn: 605 init1: 370 opt: 582 Z-score: 735.5 bits: 143.8 E(85289): 3.2e-34 Smith-Waterman score: 582; 39.1% identity (67.2% similar) in 238 aa overlap (71-307:1-233) 50 60 70 80 90 100 pF1KE6 SRKLAQLPDRCTLKTGHYNINFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYNM : .:. . : ..:: ::. : :: ..:. XP_005 MAICSCQCPAAMAFCFLETLWWEFTASYDT 10 20 30 110 120 130 140 150 160 pF1KE6 MKTNTAVRPYCFIEFDNFIQRTKQRYNNPRSLSTKINLSDMQTEIKLRPPYQISMCELGS . : ::: :.:::..::..: ..: : . . .: .: :.::.:: ... . XP_005 TCIGLASRPYAFLEFDSIIQKVKWHFNYVSSSQMECSLEKIQEELKLQPPAVLTLEDTDV 40 50 60 70 80 90 170 180 190 200 210 pF1KE6 ANGVTSAFS-VDCKGAGKISSAHQRLEPATLSGIVGFILSLLCGALNLIRGFHAIESLLQ :::: .. . . . : .. :.::.: ::...::...:.::::::: : : :: XP_005 ANGVMNGHTPMHLEPAPNF-----RMEPVTALGILSLILNIMCAALNLIRGVHLAEHSLQ 100 110 120 130 140 220 230 240 250 260 270 pF1KE6 SDGDDFNYIIAFFLGTAACLYQCYLLVYYTGWRNVKSFLTFGLICLCNMYLYELRNLWQL .... :.::.. .::..:::: ..:. :..: : . .::: ::::. ::::::. XP_005 VAHEEIGNILAFLVPFVACIFQCYLYLFYSPARTMKVVLMLLFICLGNMYLHGLRNLWQI 150 160 170 180 190 200 280 290 300 pF1KE6 FFHVTVGAFVTLQIWLRQAQGKAPDYDV .::. :. . . :: :: : : : : XP_005 LFHIGVAFLSSYQILTRQLQEKQSDCGV 210 220 230 >>XP_005265592 (OMIM: 604028) PREDICTED: vesicle-traffic (233 aa) initn: 605 init1: 370 opt: 582 Z-score: 735.5 bits: 143.8 E(85289): 3.2e-34 Smith-Waterman score: 582; 39.1% identity (67.2% similar) in 238 aa overlap (71-307:1-233) 50 60 70 80 90 100 pF1KE6 SRKLAQLPDRCTLKTGHYNINFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYNM : .:. . : ..:: ::. : :: ..:. XP_005 MAICSCQCPAAMAFCFLETLWWEFTASYDT 10 20 30 110 120 130 140 150 160 pF1KE6 MKTNTAVRPYCFIEFDNFIQRTKQRYNNPRSLSTKINLSDMQTEIKLRPPYQISMCELGS . : ::: :.:::..::..: ..: : . . .: .: :.::.:: ... . XP_005 TCIGLASRPYAFLEFDSIIQKVKWHFNYVSSSQMECSLEKIQEELKLQPPAVLTLEDTDV 40 50 60 70 80 90 170 180 190 200 210 pF1KE6 ANGVTSAFS-VDCKGAGKISSAHQRLEPATLSGIVGFILSLLCGALNLIRGFHAIESLLQ :::: .. . . . : .. :.::.: ::...::...:.::::::: : : :: XP_005 ANGVMNGHTPMHLEPAPNF-----RMEPVTALGILSLILNIMCAALNLIRGVHLAEHSLQ 100 110 120 130 140 220 230 240 250 260 270 pF1KE6 SDGDDFNYIIAFFLGTAACLYQCYLLVYYTGWRNVKSFLTFGLICLCNMYLYELRNLWQL .... :.::.. .::..:::: ..:. :..: : . .::: ::::. ::::::. XP_005 VAHEEIGNILAFLVPFVACIFQCYLYLFYSPARTMKVVLMLLFICLGNMYLHGLRNLWQI 150 160 170 180 190 200 280 290 300 pF1KE6 FFHVTVGAFVTLQIWLRQAQGKAPDYDV .::. :. . . :: :: : : : : XP_005 LFHIGVAFLSSYQILTRQLQEKQSDCGV 210 220 230 >>XP_005265590 (OMIM: 604028) PREDICTED: vesicle-traffic (233 aa) initn: 605 init1: 370 opt: 582 Z-score: 735.5 bits: 143.8 E(85289): 3.2e-34 Smith-Waterman score: 582; 39.1% identity (67.2% similar) in 238 aa overlap (71-307:1-233) 50 60 70 80 90 100 pF1KE6 SRKLAQLPDRCTLKTGHYNINFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYNM : .:. . : ..:: ::. : :: ..:. XP_005 MAICSCQCPAAMAFCFLETLWWEFTASYDT 10 20 30 110 120 130 140 150 160 pF1KE6 MKTNTAVRPYCFIEFDNFIQRTKQRYNNPRSLSTKINLSDMQTEIKLRPPYQISMCELGS . : ::: :.:::..::..: ..: : . . .: .: :.::.:: ... . XP_005 TCIGLASRPYAFLEFDSIIQKVKWHFNYVSSSQMECSLEKIQEELKLQPPAVLTLEDTDV 40 50 60 70 80 90 170 180 190 200 210 pF1KE6 ANGVTSAFS-VDCKGAGKISSAHQRLEPATLSGIVGFILSLLCGALNLIRGFHAIESLLQ :::: .. . . . : .. :.::.: ::...::...:.::::::: : : :: XP_005 ANGVMNGHTPMHLEPAPNF-----RMEPVTALGILSLILNIMCAALNLIRGVHLAEHSLQ 100 110 120 130 140 220 230 240 250 260 270 pF1KE6 SDGDDFNYIIAFFLGTAACLYQCYLLVYYTGWRNVKSFLTFGLICLCNMYLYELRNLWQL .... :.::.. .::..:::: ..:. :..: : . .::: ::::. ::::::. XP_005 VAHEEIGNILAFLVPFVACIFQCYLYLFYSPARTMKVVLMLLFICLGNMYLHGLRNLWQI 150 160 170 180 190 200 280 290 300 pF1KE6 FFHVTVGAFVTLQIWLRQAQGKAPDYDV .::. :. . . :: :: : : : : XP_005 LFHIGVAFLSSYQILTRQLQEKQSDCGV 210 220 230 >>NP_004197 (OMIM: 604028) vesicle-trafficking protein S (250 aa) initn: 561 init1: 408 opt: 554 Z-score: 700.0 bits: 137.3 E(85289): 3e-32 Smith-Waterman score: 554; 39.1% identity (68.3% similar) in 243 aa overlap (1-241:1-237) 10 20 30 40 50 60 pF1KE6 MSMILSASVIRVRDGLPLSASTDYEQSTGMQECRKYFKMLSRKLAQLPDRCTLKTGHYNI ::.:. : :.:::::::::::::. .. . : :. .: :. .::: : : . . ..: NP_004 MSVIFFACVVRVRDGLPLSASTDFYHTQDFLEWRRRLKSLALRLAQYPGRGSAEGCDFSI 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 NFISSLG-VSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFI .: ::.: :. : .:. . : ..:: ::. : :: ..:. . : ::: :.:::..: NP_004 HF-SSFGDVACMAICSCQCPAAMAFCFLETLWWEFTASYDTTCIGLASRPYAFLEFDSII 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 QRTKQRYNNPRSLSTKINLSDMQTEIKLRPPYQISMCELGSANGVTSAFS-VDCKGAGKI :..: ..: : . . .: .: :.::.:: ... . :::: .. . . . : .. NP_004 QKVKWHFNYVSSSQMECSLEKIQEELKLQPPAVLTLEDTDVANGVMNGHTPMHLEPAPNF 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE6 SSAHQRLEPATLSGIVGFILSLLCGALNLIRGFHAIESLLQSDGDDFNYIIAFFLGTAAC :.::.: ::...::...:.::::::: : : :: .... :.::.. .:: NP_004 -----RMEPVTALGILSLILNIMCAALNLIRGVHLAEHSLQVAHEEIGNILAFLVPFVAC 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE6 LYQCYLLVYYTGWRNVKSFLTFGLICLCNMYLYELRNLWQLFFHVTVGAFVTLQIWLRQA ..: NP_004 IFQDPRSWFCWLDQTS 240 250 307 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 12:43:45 2016 done: Tue Nov 8 12:43:46 2016 Total Scan time: 6.350 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]