FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6378, 307 aa 1>>>pF1KE6378 307 - 307 aa - 307 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6350+/-0.00105; mu= 13.5271+/- 0.063 mean_var=62.5282+/-12.503, 0's: 0 Z-trim(102.8): 28 B-trim: 0 in 0/50 Lambda= 0.162195 statistics sampled from 7092 (7105) to 7092 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.606), E-opt: 0.2 (0.218), width: 16 Scan time: 2.070 The best scores are: opt bits E(32554) CCDS3021.1 SEC22A gene_id:26984|Hs108|chr3 ( 307) 2054 489.5 1.4e-138 CCDS2700.1 SEC22C gene_id:9117|Hs108|chr3 ( 303) 757 186.0 3.2e-47 CCDS2699.1 SEC22C gene_id:9117|Hs108|chr3 ( 250) 554 138.4 5.3e-33 CCDS56246.1 SEC22C gene_id:9117|Hs108|chr3 ( 228) 510 128.1 6.1e-30 CCDS83523.1 SEC22B gene_id:9554|Hs108|chr1 ( 215) 350 90.7 1.1e-18 >>CCDS3021.1 SEC22A gene_id:26984|Hs108|chr3 (307 aa) initn: 2054 init1: 2054 opt: 2054 Z-score: 2601.5 bits: 489.5 E(32554): 1.4e-138 Smith-Waterman score: 2054; 100.0% identity (100.0% similar) in 307 aa overlap (1-307:1-307) 10 20 30 40 50 60 pF1KE6 MSMILSASVIRVRDGLPLSASTDYEQSTGMQECRKYFKMLSRKLAQLPDRCTLKTGHYNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 MSMILSASVIRVRDGLPLSASTDYEQSTGMQECRKYFKMLSRKLAQLPDRCTLKTGHYNI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 NFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 NFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFIQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 RTKQRYNNPRSLSTKINLSDMQTEIKLRPPYQISMCELGSANGVTSAFSVDCKGAGKISS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 RTKQRYNNPRSLSTKINLSDMQTEIKLRPPYQISMCELGSANGVTSAFSVDCKGAGKISS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 AHQRLEPATLSGIVGFILSLLCGALNLIRGFHAIESLLQSDGDDFNYIIAFFLGTAACLY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 AHQRLEPATLSGIVGFILSLLCGALNLIRGFHAIESLLQSDGDDFNYIIAFFLGTAACLY 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 QCYLLVYYTGWRNVKSFLTFGLICLCNMYLYELRNLWQLFFHVTVGAFVTLQIWLRQAQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS30 QCYLLVYYTGWRNVKSFLTFGLICLCNMYLYELRNLWQLFFHVTVGAFVTLQIWLRQAQG 250 260 270 280 290 300 pF1KE6 KAPDYDV ::::::: CCDS30 KAPDYDV >>CCDS2700.1 SEC22C gene_id:9117|Hs108|chr3 (303 aa) initn: 796 init1: 408 opt: 757 Z-score: 961.4 bits: 186.0 E(32554): 3.2e-47 Smith-Waterman score: 757; 40.8% identity (68.3% similar) in 309 aa overlap (1-307:1-303) 10 20 30 40 50 60 pF1KE6 MSMILSASVIRVRDGLPLSASTDYEQSTGMQECRKYFKMLSRKLAQLPDRCTLKTGHYNI ::.:. : :.:::::::::::::. .. . : :. .: :. .::: : : . . ..: CCDS27 MSVIFFACVVRVRDGLPLSASTDFYHTQDFLEWRRRLKSLALRLAQYPGRGSAEGCDFSI 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 NFISSLG-VSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFI .: ::.: :. : .:. . : ..:: ::. : :: ..:. . : ::: :.:::..: CCDS27 HF-SSFGDVACMAICSCQCPAAMAFCFLETLWWEFTASYDTTCIGLASRPYAFLEFDSII 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 QRTKQRYNNPRSLSTKINLSDMQTEIKLRPPYQISMCELGSANGVTSAFS-VDCKGAGKI :..: ..: : . . .: .: :.::.:: ... . :::: .. . . . : .. CCDS27 QKVKWHFNYVSSSQMECSLEKIQEELKLQPPAVLTLEDTDVANGVMNGHTPMHLEPAPNF 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE6 SSAHQRLEPATLSGIVGFILSLLCGALNLIRGFHAIESLLQSDGDDFNYIIAFFLGTAAC :.::.: ::...::...:.::::::: : : :: .... :.::.. .:: CCDS27 -----RMEPVTALGILSLILNIMCAALNLIRGVHLAEHSLQVAHEEIGNILAFLVPFVAC 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE6 LYQCYLLVYYTGWRNVKSFLTFGLICLCNMYLYELRNLWQLFFHVTVGAFVTLQIWLRQA ..:::: ..:. :..: : . .::: ::::. ::::::..::. :. . . :: :: CCDS27 IFQCYLYLFYSPARTMKVVLMLLFICLGNMYLHGLRNLWQILFHIGVAFLSSYQILTRQL 240 250 260 270 280 290 300 pF1KE6 QGKAPDYDV : : : : CCDS27 QEKQSDCGV 300 >>CCDS2699.1 SEC22C gene_id:9117|Hs108|chr3 (250 aa) initn: 561 init1: 408 opt: 554 Z-score: 706.0 bits: 138.4 E(32554): 5.3e-33 Smith-Waterman score: 554; 39.1% identity (68.3% similar) in 243 aa overlap (1-241:1-237) 10 20 30 40 50 60 pF1KE6 MSMILSASVIRVRDGLPLSASTDYEQSTGMQECRKYFKMLSRKLAQLPDRCTLKTGHYNI ::.:. : :.:::::::::::::. .. . : :. .: :. .::: : : . . ..: CCDS26 MSVIFFACVVRVRDGLPLSASTDFYHTQDFLEWRRRLKSLALRLAQYPGRGSAEGCDFSI 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 NFISSLG-VSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFI .: ::.: :. : .:. . : ..:: ::. : :: ..:. . : ::: :.:::..: CCDS26 HF-SSFGDVACMAICSCQCPAAMAFCFLETLWWEFTASYDTTCIGLASRPYAFLEFDSII 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 QRTKQRYNNPRSLSTKINLSDMQTEIKLRPPYQISMCELGSANGVTSAFS-VDCKGAGKI :..: ..: : . . .: .: :.::.:: ... . :::: .. . . . : .. CCDS26 QKVKWHFNYVSSSQMECSLEKIQEELKLQPPAVLTLEDTDVANGVMNGHTPMHLEPAPNF 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE6 SSAHQRLEPATLSGIVGFILSLLCGALNLIRGFHAIESLLQSDGDDFNYIIAFFLGTAAC :.::.: ::...::...:.::::::: : : :: .... :.::.. .:: CCDS26 -----RMEPVTALGILSLILNIMCAALNLIRGVHLAEHSLQVAHEEIGNILAFLVPFVAC 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE6 LYQCYLLVYYTGWRNVKSFLTFGLICLCNMYLYELRNLWQLFFHVTVGAFVTLQIWLRQA ..: CCDS26 IFQDPRSWFCWLDQTS 240 250 >>CCDS56246.1 SEC22C gene_id:9117|Hs108|chr3 (228 aa) initn: 526 init1: 408 opt: 510 Z-score: 651.0 bits: 128.1 E(32554): 6.1e-30 Smith-Waterman score: 510; 39.1% identity (67.4% similar) in 230 aa overlap (1-228:1-224) 10 20 30 40 50 60 pF1KE6 MSMILSASVIRVRDGLPLSASTDYEQSTGMQECRKYFKMLSRKLAQLPDRCTLKTGHYNI ::.:. : :.:::::::::::::. .. . : :. .: :. .::: : : . . ..: CCDS56 MSVIFFACVVRVRDGLPLSASTDFYHTQDFLEWRRRLKSLALRLAQYPGRGSAEGCDFSI 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 NFISSLG-VSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFI .: ::.: :. : .:. . : ..:: ::. : :: ..:. . : ::: :.:::..: CCDS56 HF-SSFGDVACMAICSCQCPAAMAFCFLETLWWEFTASYDTTCIGLASRPYAFLEFDSII 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 QRTKQRYNNPRSLSTKINLSDMQTEIKLRPPYQISMCELGSANGVTSAFS-VDCKGAGKI :..: ..: : . . .: .: :.::.:: ... . :::: .. . . . : .. CCDS56 QKVKWHFNYVSSSQMECSLEKIQEELKLQPPAVLTLEDTDVANGVMNGHTPMHLEPAPNF 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE6 SSAHQRLEPATLSGIVGFILSLLCGALNLIRGFHAIESLLQSDGDDFNYIIAFFLGTAAC :.::.: ::...::...:.::::::: : : ::. . : .. CCDS56 -----RMEPVTALGILSLILNIMCAALNLIRGVHLAEHSLQDPRSWFCWLDQTS 180 190 200 210 220 240 250 260 270 280 290 pF1KE6 LYQCYLLVYYTGWRNVKSFLTFGLICLCNMYLYELRNLWQLFFHVTVGAFVTLQIWLRQA >>CCDS83523.1 SEC22B gene_id:9554|Hs108|chr1 (215 aa) initn: 302 init1: 156 opt: 350 Z-score: 449.1 bits: 90.7 E(32554): 1.1e-18 Smith-Waterman score: 350; 40.8% identity (72.8% similar) in 147 aa overlap (3-146:1-143) 10 20 30 40 50 pF1KE6 MSMILSASVIRVRDGLPLSASTDYEQSTG--MQECRKYFKMLSRKLA-QLPDRCTLKTGH :.: . . :: :::::.:: . ....: .:. .. :.: ::: : : ::::..: CCDS83 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGA 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 YNINFISSLGVSYMMLCTENYPNVLAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDN .....: :: :..:: .:. :::..:..:..:: .. :. :. ::: :::::. CCDS83 MTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGK-KVPTVSRPYSFIEFDT 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 FIQRTKQRYNNPRSLSTKINLSDMQTEIKLRPPYQISMCELGSANGVTSAFSVDCKGAGK :::.::. : . :. . ::....::.. CCDS83 FIQKTKKLYIDSRA---RRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLS 120 130 140 150 160 170 307 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 12:43:45 2016 done: Tue Nov 8 12:43:45 2016 Total Scan time: 2.070 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]