FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5245, 187 aa 1>>>pF1KE5245 187 - 187 aa - 187 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9567+/-0.000711; mu= 14.5345+/- 0.043 mean_var=56.9494+/-11.498, 0's: 0 Z-trim(108.6): 12 B-trim: 239 in 1/49 Lambda= 0.169953 statistics sampled from 10337 (10343) to 10337 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.318), width: 16 Scan time: 1.410 The best scores are: opt bits E(32554) CCDS2926.1 DHFR2 gene_id:200895|Hs108|chr3 ( 187) 1249 313.9 3.6e-86 CCDS47240.1 DHFR gene_id:1719|Hs108|chr5 ( 187) 1130 284.7 2.2e-77 CCDS78028.1 DHFR gene_id:1719|Hs108|chr5 ( 135) 821 208.9 1.1e-54 CCDS78029.1 DHFR gene_id:1719|Hs108|chr5 ( 129) 759 193.7 3.9e-50 >>CCDS2926.1 DHFR2 gene_id:200895|Hs108|chr3 (187 aa) initn: 1249 init1: 1249 opt: 1249 Z-score: 1660.4 bits: 313.9 E(32554): 3.6e-86 Smith-Waterman score: 1249; 100.0% identity (100.0% similar) in 187 aa overlap (1-187:1-187) 10 20 30 40 50 60 pF1KE5 MFLLLNCIVAVSQNMGIGKNGDLPRPPLRNEFRYFQRMTTTSSVEGKQNLVIMGRKTWFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 MFLLLNCIVAVSQNMGIGKNGDLPRPPLRNEFRYFQRMTTTSSVEGKQNLVIMGRKTWFS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 IPEKNRPLKDRINLVLSRELKEPPQGAHFLARSLDDALKLTERPELANKVDMIWIVGGSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 IPEKNRPLKDRINLVLSRELKEPPQGAHFLARSLDDALKLTERPELANKVDMIWIVGGSS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 VYKEAMNHLGHLKLFVTRIMQDFESDTFFSEIDLEKYKLLPEYPGVLSDVQEGKHIKYKF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 VYKEAMNHLGHLKLFVTRIMQDFESDTFFSEIDLEKYKLLPEYPGVLSDVQEGKHIKYKF 130 140 150 160 170 180 pF1KE5 EVCEKDD ::::::: CCDS29 EVCEKDD >>CCDS47240.1 DHFR gene_id:1719|Hs108|chr5 (187 aa) initn: 1130 init1: 1130 opt: 1130 Z-score: 1502.7 bits: 284.7 E(32554): 2.2e-77 Smith-Waterman score: 1130; 93.4% identity (96.2% similar) in 183 aa overlap (5-187:5-187) 10 20 30 40 50 60 pF1KE5 MFLLLNCIVAVSQNMGIGKNGDLPRPPLRNEFRYFQRMTTTSSVEGKQNLVIMGRKTWFS :::::::::::::::::::: :::::::::::::::::::::::::::::.::::: CCDS47 MVGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 IPEKNRPLKDRINLVLSRELKEPPQGAHFLARSLDDALKLTERPELANKVDMIWIVGGSS ::::::::: ::::::::::::::::::::.:::::::::::.:::::::::.::::::: CCDS47 IPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 VYKEAMNHLGHLKLFVTRIMQDFESDTFFSEIDLEKYKLLPEYPGVLSDVQEGKHIKYKF :::::::: :::::::::::::::::::: :::::::::::::::::::::: : ::::: CCDS47 VYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKF 130 140 150 160 170 180 pF1KE5 EVCEKDD :: ::.: CCDS47 EVYEKND >>CCDS78028.1 DHFR gene_id:1719|Hs108|chr5 (135 aa) initn: 836 init1: 821 opt: 821 Z-score: 1095.4 bits: 208.9 E(32554): 1.1e-54 Smith-Waterman score: 821; 91.9% identity (95.6% similar) in 135 aa overlap (53-187:1-135) 30 40 50 60 70 80 pF1KE5 LPRPPLRNEFRYFQRMTTTSSVEGKQNLVIMGRKTWFSIPEKNRPLKDRINLVLSRELKE ::.:::::::::::::: :::::::::::: CCDS78 MGKKTWFSIPEKNRPLKGRINLVLSRELKE 10 20 30 90 100 110 120 130 140 pF1KE5 PPQGAHFLARSLDDALKLTERPELANKVDMIWIVGGSSVYKEAMNHLGHLKLFVTRIMQD ::::::::.:::::::::::.:::::::::.::::::::::::::: ::::::::::::: CCDS78 PPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQD 40 50 60 70 80 90 150 160 170 180 pF1KE5 FESDTFFSEIDLEKYKLLPEYPGVLSDVQEGKHIKYKFEVCEKDD ::::::: :::::::::::::::::::::: : ::::::: ::.: CCDS78 FESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEKND 100 110 120 130 >>CCDS78029.1 DHFR gene_id:1719|Hs108|chr5 (129 aa) initn: 759 init1: 759 opt: 759 Z-score: 1013.5 bits: 193.7 E(32554): 3.9e-50 Smith-Waterman score: 759; 95.0% identity (98.3% similar) in 119 aa overlap (5-123:5-123) 10 20 30 40 50 60 pF1KE5 MFLLLNCIVAVSQNMGIGKNGDLPRPPLRNEFRYFQRMTTTSSVEGKQNLVIMGRKTWFS :::::::::::::::::::: :::::::::::::::::::::::::::::.::::: CCDS78 MVGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 IPEKNRPLKDRINLVLSRELKEPPQGAHFLARSLDDALKLTERPELANKVDMIWIVGGSS ::::::::: ::::::::::::::::::::.:::::::::::.:::::::::.::::::: CCDS78 IPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 VYKEAMNHLGHLKLFVTRIMQDFESDTFFSEIDLEKYKLLPEYPGVLSDVQEGKHIKYKF ::: CCDS78 VYKIPRCSL 187 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:50:03 2016 done: Mon Nov 7 22:50:04 2016 Total Scan time: 1.410 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]