FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4081, 428 aa 1>>>pF1KE4081 428 - 428 aa - 428 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.5504+/-0.0009; mu= 0.1209+/- 0.055 mean_var=228.1076+/-45.755, 0's: 0 Z-trim(115.1): 42 B-trim: 448 in 1/54 Lambda= 0.084919 statistics sampled from 15653 (15695) to 15653 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.774), E-opt: 0.2 (0.482), width: 16 Scan time: 3.380 The best scores are: opt bits E(32554) CCDS2925.1 ARL13B gene_id:200894|Hs108|chr3 ( 428) 2899 367.4 1.5e-101 CCDS54615.1 ARL13B gene_id:200894|Hs108|chr3 ( 325) 2198 281.5 8.4e-76 CCDS2924.1 ARL13B gene_id:200894|Hs108|chr3 ( 321) 2044 262.6 4e-70 CCDS55463.1 ARL13A gene_id:392509|Hs108|chrX ( 256) 552 79.8 3.5e-15 >>CCDS2925.1 ARL13B gene_id:200894|Hs108|chr3 (428 aa) initn: 2899 init1: 2899 opt: 2899 Z-score: 1936.8 bits: 367.4 E(32554): 1.5e-101 Smith-Waterman score: 2899; 100.0% identity (100.0% similar) in 428 aa overlap (1-428:1-428) 10 20 30 40 50 60 pF1KE4 MFSLMASCCGWFKRWREPVRKVTLLMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKINL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 MFSLMASCCGWFKRWREPVRKVTLLMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKINL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 RQGKFEVTIFDLGGGIRIRGIWKNYYAESYGVIFVVDSSDEERMEETKEAMSEMLRHPRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 RQGKFEVTIFDLGGGIRIRGIWKNYYAESYGVIFVVDSSDEERMEETKEAMSEMLRHPRI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 SGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAISGYGKKIDKSIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 SGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAISGYGKKIDKSIK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 KGLYWLLHVIARDFDALNERIQKETTEQRALEEQEKQERAERVRKLREERKQNEQEQAEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 KGLYWLLHVIARDFDALNERIQKETTEQRALEEQEKQERAERVRKLREERKQNEQEQAEL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 DGTSGLAELDPEPTNPFQPIASVIIENEGKLEREKKNQKMEKDSDGCHLKHKMEHEQIET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 DGTSGLAELDPEPTNPFQPIASVIIENEGKLEREKKNQKMEKDSDGCHLKHKMEHEQIET 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 QGQVNHNGQKNNEFGLVENYKEALTQQLKNEDETDRPSLESANGKKKTKKLRMKRNHRVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 QGQVNHNGQKNNEFGLVENYKEALTQQLKNEDETDRPSLESANGKKKTKKLRMKRNHRVE 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 PLNIDDCAPESPTPPPPPPPVGWGTPKVTRLPKLEPLGETHHNDFYRKPLPPLAVPQRPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 PLNIDDCAPESPTPPPPPPPVGWGTPKVTRLPKLEPLGETHHNDFYRKPLPPLAVPQRPN 370 380 390 400 410 420 pF1KE4 SDAHDVIS :::::::: CCDS29 SDAHDVIS >>CCDS54615.1 ARL13B gene_id:200894|Hs108|chr3 (325 aa) initn: 2198 init1: 2198 opt: 2198 Z-score: 1474.4 bits: 281.5 E(32554): 8.4e-76 Smith-Waterman score: 2198; 100.0% identity (100.0% similar) in 325 aa overlap (104-428:1-325) 80 90 100 110 120 130 pF1KE4 GGIRIRGIWKNYYAESYGVIFVVDSSDEERMEETKEAMSEMLRHPRISGKPILVLANKQD :::::::::::::::::::::::::::::: CCDS54 MEETKEAMSEMLRHPRISGKPILVLANKQD 10 20 30 140 150 160 170 180 190 pF1KE4 KEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAISGYGKKIDKSIKKGLYWLLHVIARD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 KEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAISGYGKKIDKSIKKGLYWLLHVIARD 40 50 60 70 80 90 200 210 220 230 240 250 pF1KE4 FDALNERIQKETTEQRALEEQEKQERAERVRKLREERKQNEQEQAELDGTSGLAELDPEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 FDALNERIQKETTEQRALEEQEKQERAERVRKLREERKQNEQEQAELDGTSGLAELDPEP 100 110 120 130 140 150 260 270 280 290 300 310 pF1KE4 TNPFQPIASVIIENEGKLEREKKNQKMEKDSDGCHLKHKMEHEQIETQGQVNHNGQKNNE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 TNPFQPIASVIIENEGKLEREKKNQKMEKDSDGCHLKHKMEHEQIETQGQVNHNGQKNNE 160 170 180 190 200 210 320 330 340 350 360 370 pF1KE4 FGLVENYKEALTQQLKNEDETDRPSLESANGKKKTKKLRMKRNHRVEPLNIDDCAPESPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 FGLVENYKEALTQQLKNEDETDRPSLESANGKKKTKKLRMKRNHRVEPLNIDDCAPESPT 220 230 240 250 260 270 380 390 400 410 420 pF1KE4 PPPPPPPVGWGTPKVTRLPKLEPLGETHHNDFYRKPLPPLAVPQRPNSDAHDVIS ::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 PPPPPPPVGWGTPKVTRLPKLEPLGETHHNDFYRKPLPPLAVPQRPNSDAHDVIS 280 290 300 310 320 >>CCDS2924.1 ARL13B gene_id:200894|Hs108|chr3 (321 aa) initn: 2192 init1: 2044 opt: 2044 Z-score: 1372.5 bits: 262.6 E(32554): 4e-70 Smith-Waterman score: 2044; 100.0% identity (100.0% similar) in 301 aa overlap (128-428:21-321) 100 110 120 130 140 150 pF1KE4 SSDEERMEETKEAMSEMLRHPRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHK :::::::::::::::::::::::::::::: CCDS29 MFSLMASCCGWFKRWREPVRLANKQDKEGALGEADVIECLSLEKLVNEHK 10 20 30 40 50 160 170 180 190 200 210 pF1KE4 CLCQIEPCSAISGYGKKIDKSIKKGLYWLLHVIARDFDALNERIQKETTEQRALEEQEKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 CLCQIEPCSAISGYGKKIDKSIKKGLYWLLHVIARDFDALNERIQKETTEQRALEEQEKQ 60 70 80 90 100 110 220 230 240 250 260 270 pF1KE4 ERAERVRKLREERKQNEQEQAELDGTSGLAELDPEPTNPFQPIASVIIENEGKLEREKKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 ERAERVRKLREERKQNEQEQAELDGTSGLAELDPEPTNPFQPIASVIIENEGKLEREKKN 120 130 140 150 160 170 280 290 300 310 320 330 pF1KE4 QKMEKDSDGCHLKHKMEHEQIETQGQVNHNGQKNNEFGLVENYKEALTQQLKNEDETDRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 QKMEKDSDGCHLKHKMEHEQIETQGQVNHNGQKNNEFGLVENYKEALTQQLKNEDETDRP 180 190 200 210 220 230 340 350 360 370 380 390 pF1KE4 SLESANGKKKTKKLRMKRNHRVEPLNIDDCAPESPTPPPPPPPVGWGTPKVTRLPKLEPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 SLESANGKKKTKKLRMKRNHRVEPLNIDDCAPESPTPPPPPPPVGWGTPKVTRLPKLEPL 240 250 260 270 280 290 400 410 420 pF1KE4 GETHHNDFYRKPLPPLAVPQRPNSDAHDVIS ::::::::::::::::::::::::::::::: CCDS29 GETHHNDFYRKPLPPLAVPQRPNSDAHDVIS 300 310 320 >>CCDS55463.1 ARL13A gene_id:392509|Hs108|chrX (256 aa) initn: 552 init1: 552 opt: 552 Z-score: 386.0 bits: 79.8 E(32554): 3.5e-15 Smith-Waterman score: 552; 43.2% identity (73.2% similar) in 190 aa overlap (1-190:1-190) 10 20 30 40 50 60 pF1KE4 MFSLMASCCGWFKRWREPVRKVTLLMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKINL :: :..:::. .. .: :.::. ..::.:.:::. ....: : . . .: CCDS55 MFRLLSSCCSCLRTTEETRRNVTIPIIGLNNSGKTVLVEAFQKLLPSKTDHCMKSELTTL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 RQGKFEVTIFDLGGGIRIRGIWKNYYAESYGVIFVVDSSDEERMEETKEAMSEMLRHPRI ..:..:.::.: .. : : ::::...:..::.:::: .::.:.: ....: :. CCDS55 LLDEYELSIYDLNGDLKGREAWPNYYAQAHGLVFVLDSSDIRRMQEVKIILTHLLSDKRV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 SGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAISGYGKKIDKSIK .:::::.:::::::. :: :.:. : :.:::.:.:: :..:::::: . .. . : CCDS55 AGKPILILANKQDKKKALMPCDIIDYLLLKKLVKENKCPCRVEPCSAIRNLERRNHQPIV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 KGLYWLLHVIARDFDALNERIQKETTEQRALEEQEKQERAERVRKLREERKQNEQEQAEL .:: ::: :: CCDS55 EGLRWLLAVIDTCQLPPTSSISISKNNTGSGERCSSHSFSTRTGMSKEKRQHLEQCSIEA 190 200 210 220 230 240 428 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 03:31:06 2016 done: Sun Nov 6 03:31:07 2016 Total Scan time: 3.380 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]