FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3021, 108 aa 1>>>pF1KE3021 108 - 108 aa - 108 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7060+/-0.000252; mu= 13.5022+/- 0.016 mean_var=68.2081+/-13.103, 0's: 0 Z-trim(121.6): 24 B-trim: 33 in 1/57 Lambda= 0.155295 statistics sampled from 38309 (38340) to 38309 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.805), E-opt: 0.2 (0.45), width: 16 Scan time: 4.450 The best scores are: opt bits E(85289) NP_068754 (OMIM: 607002,610628) prokineticin-2 iso ( 108) 792 185.0 2.1e-47 NP_001119600 (OMIM: 607002,610628) prokineticin-2 ( 129) 535 127.5 5.1e-30 NP_115790 (OMIM: 606233) prokineticin-1 precursor ( 105) 408 98.9 1.6e-21 XP_016862463 (OMIM: 607002,610628) PREDICTED: prok ( 109) 332 81.9 2.2e-16 NP_055236 (OMIM: 605415) dickkopf-related protein ( 259) 149 41.3 0.00091 NP_055235 (OMIM: 605417) dickkopf-related protein ( 224) 148 41.0 0.00095 XP_016868805 (OMIM: 605417) PREDICTED: dickkopf-re ( 224) 148 41.0 0.00095 XP_011542790 (OMIM: 605417) PREDICTED: dickkopf-re ( 224) 148 41.0 0.00095 NP_056965 (OMIM: 605416) dickkopf-related protein ( 350) 144 40.3 0.0025 NP_037385 (OMIM: 605416) dickkopf-related protein ( 350) 144 40.3 0.0025 NP_001018067 (OMIM: 605416) dickkopf-related prote ( 350) 144 40.3 0.0025 XP_006718241 (OMIM: 605416) PREDICTED: dickkopf-re ( 350) 144 40.3 0.0025 NP_001317149 (OMIM: 605416) dickkopf-related prote ( 364) 140 39.4 0.0047 XP_016873043 (OMIM: 605416) PREDICTED: dickkopf-re ( 364) 140 39.4 0.0047 XP_016873044 (OMIM: 605416) PREDICTED: dickkopf-re ( 364) 140 39.4 0.0047 >>NP_068754 (OMIM: 607002,610628) prokineticin-2 isoform (108 aa) initn: 792 init1: 792 opt: 792 Z-score: 972.2 bits: 185.0 E(85289): 2.1e-47 Smith-Waterman score: 792; 100.0% identity (100.0% similar) in 108 aa overlap (1-108:1-108) 10 20 30 40 50 60 pF1KE3 MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_068 MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTP 10 20 30 40 50 60 70 80 90 100 pF1KE3 MGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGLACLRTSFNRFICLAQK :::::::::::::::::::::::::::::::::::::::::::::::: NP_068 MGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGLACLRTSFNRFICLAQK 70 80 90 100 >>NP_001119600 (OMIM: 607002,610628) prokineticin-2 isof (129 aa) initn: 532 init1: 532 opt: 535 Z-score: 660.0 bits: 127.5 E(85289): 5.1e-30 Smith-Waterman score: 740; 83.7% identity (83.7% similar) in 129 aa overlap (1-108:1-129) 10 20 30 40 50 60 pF1KE3 MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTP 10 20 30 40 50 60 70 80 90 pF1KE3 MGKLGDSCHPLTRK---------------------VPFFGRRMHHTCPCLPGLACLRTSF :::::::::::::: ::::::::::::::::::::::::: NP_001 MGKLGDSCHPLTRKNNFGNGRQERRKRKRSKRKKEVPFFGRRMHHTCPCLPGLACLRTSF 70 80 90 100 110 120 100 pF1KE3 NRFICLAQK ::::::::: NP_001 NRFICLAQK >>NP_115790 (OMIM: 606233) prokineticin-1 precursor [Hom (105 aa) initn: 429 init1: 393 opt: 408 Z-score: 507.4 bits: 98.9 E(85289): 1.6e-21 Smith-Waterman score: 408; 55.2% identity (80.5% similar) in 87 aa overlap (18-104:10-96) 10 20 30 40 50 60 pF1KE3 MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTP .:: ..: :::::::..: :::.: :::.:.:....:.::: NP_115 MRGATRVSIMLLLVTVSDCAVITGACERDVQCGAGTCCAISLWLRGLRMCTP 10 20 30 40 50 70 80 90 100 pF1KE3 MGKLGDSCHPLTRKVPFFGRRMHHTCPCLPGLACLRTSFNRFICLAQK .:. :. ::: ..::::: .: ::::::::.: : : .:. : NP_115 LGREGEECHPGSHKVPFFRKRKHHTCPCLPNLLCSRFPDGRYRCSMDLKNINF 60 70 80 90 100 >>XP_016862463 (OMIM: 607002,610628) PREDICTED: prokinet (109 aa) initn: 329 init1: 329 opt: 332 Z-score: 415.1 bits: 81.9 E(85289): 2.2e-16 Smith-Waterman score: 537; 75.0% identity (76.9% similar) in 104 aa overlap (26-108:6-109) 10 20 30 40 50 60 pF1KE3 MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTP : . : .:::::::::::::::::::::::::::: XP_016 MFKLRDDVFIFSACDKDSQCGGGMCCAVSIWVKSIRICTP 10 20 30 40 70 80 90 pF1KE3 MGKLGDSCHPLTRK---------------------VPFFGRRMHHTCPCLPGLACLRTSF :::::::::::::: ::::::::::::::::::::::::: XP_016 MGKLGDSCHPLTRKNNFGNGRQERRKRKRSKRKKEVPFFGRRMHHTCPCLPGLACLRTSF 50 60 70 80 90 100 100 pF1KE3 NRFICLAQK ::::::::: XP_016 NRFICLAQK >>NP_055236 (OMIM: 605415) dickkopf-related protein 2 pr (259 aa) initn: 98 init1: 48 opt: 149 Z-score: 188.6 bits: 41.3 E(85289): 0.00091 Smith-Waterman score: 149; 36.1% identity (57.4% similar) in 61 aa overlap (34-94:183-239) 10 20 30 40 50 60 pF1KE3 LCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTPMGK : ..:.: :.::: .:.: :: :. . NP_055 GHYSNHDLGWQNLGRPHTKMSHIKGHEGDPCLRSSDCIEGFCCARHFWTK---ICKPVLH 160 170 180 190 200 70 80 90 100 pF1KE3 LGDSCHPLTRKVPFFGRRMHHTCPCLPGLACLRTSFNRFICLAQK :. : :: : .. . : : ::.: NP_055 QGEVCTK-QRKKGSHGLEIFQRCDCAKGLSCKVWKDATYSSKARLHVCQKI 210 220 230 240 250 >>NP_055235 (OMIM: 605417) dickkopf-related protein 4 pr (224 aa) initn: 174 init1: 78 opt: 148 Z-score: 188.3 bits: 41.0 E(85289): 0.00095 Smith-Waterman score: 148; 36.4% identity (54.5% similar) in 66 aa overlap (33-94:144-202) 10 20 30 40 50 60 pF1KE3 SLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTPMG .: . .:: :.::: .:.: :: :. NP_055 GTTGHPVQENQPKRKPSIKKSQGRKGQEGESCLRTFDCGPGLCCARHFWTK---ICKPVL 120 130 140 150 160 170 70 80 90 100 pF1KE3 KLGDSC----HPLTRKVPFFGRRMHHTCPCLPGLACLRTSFNRFICLAQK :. : : : ..: . .: : : ::: : NP_055 LEGQVCSRRGHKDTAQAPEIFQR----CDCGPGLLCRSQLTSNRQHARLRVCQKIEKL 180 190 200 210 220 >>XP_016868805 (OMIM: 605417) PREDICTED: dickkopf-relate (224 aa) initn: 174 init1: 78 opt: 148 Z-score: 188.3 bits: 41.0 E(85289): 0.00095 Smith-Waterman score: 148; 36.4% identity (54.5% similar) in 66 aa overlap (33-94:144-202) 10 20 30 40 50 60 pF1KE3 SLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTPMG .: . .:: :.::: .:.: :: :. XP_016 GTTGHPVQENQPKRKPSIKKSQGRKGQEGESCLRTFDCGPGLCCARHFWTK---ICKPVL 120 130 140 150 160 170 70 80 90 100 pF1KE3 KLGDSC----HPLTRKVPFFGRRMHHTCPCLPGLACLRTSFNRFICLAQK :. : : : ..: . .: : : ::: : XP_016 LEGQVCSRRGHKDTAQAPEIFQR----CDCGPGLLCRSQLTSNRQHARLRVCQKIEKL 180 190 200 210 220 >>XP_011542790 (OMIM: 605417) PREDICTED: dickkopf-relate (224 aa) initn: 174 init1: 78 opt: 148 Z-score: 188.3 bits: 41.0 E(85289): 0.00095 Smith-Waterman score: 148; 36.4% identity (54.5% similar) in 66 aa overlap (33-94:144-202) 10 20 30 40 50 60 pF1KE3 SLCCAPLLLLLLLPPLLLTPRAGDAAVITGACDKDSQCGGGMCCAVSIWVKSIRICTPMG .: . .:: :.::: .:.: :: :. XP_011 GTTGHPVQENQPKRKPSIKKSQGRKGQEGESCLRTFDCGPGLCCARHFWTK---ICKPVL 120 130 140 150 160 170 70 80 90 100 pF1KE3 KLGDSC----HPLTRKVPFFGRRMHHTCPCLPGLACLRTSFNRFICLAQK :. : : : ..: . .: : : ::: : XP_011 LEGQVCSRRGHKDTAQAPEIFQR----CDCGPGLLCRSQLTSNRQHARLRVCQKIEKL 180 190 200 210 220 >>NP_056965 (OMIM: 605416) dickkopf-related protein 3 is (350 aa) initn: 171 init1: 71 opt: 144 Z-score: 180.9 bits: 40.3 E(85289): 0.0025 Smith-Waterman score: 144; 26.6% identity (53.2% similar) in 109 aa overlap (3-104:182-284) 10 20 30 pF1KE3 MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITG : ::. : . . : :...... NP_056 DCGPSMYCQFASFQYTCQPCRGQRMLCTRDSECCGDQLCVWGHCTKMAT-RGSNGTI--- 160 170 180 190 200 40 50 60 70 80 pF1KE3 ACDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCH-PLTRKVPFFGRRMH-----HTC ::.. .: :.::: . . . .:::. :. :: : .: . .. ... : NP_056 -CDNQRDCQPGLCCAFQRGLL-FPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRC 210 220 230 240 250 260 90 100 pF1KE3 PCLPGLACLRTSFNR-FICLAQK :: :: : : . ..: NP_056 PCASGLLCQPHSHSLVYVCKPTFVGSRDQDGEILLPREVPDEYEVGSFMEEVRQELEDLE 270 280 290 300 310 320 >>NP_037385 (OMIM: 605416) dickkopf-related protein 3 is (350 aa) initn: 171 init1: 71 opt: 144 Z-score: 180.9 bits: 40.3 E(85289): 0.0025 Smith-Waterman score: 144; 26.6% identity (53.2% similar) in 109 aa overlap (3-104:182-284) 10 20 30 pF1KE3 MRSLCCAPLLLLLLLPPLLLTPRAGDAAVITG : ::. : . . : :...... NP_037 DCGPSMYCQFASFQYTCQPCRGQRMLCTRDSECCGDQLCVWGHCTKMAT-RGSNGTI--- 160 170 180 190 200 40 50 60 70 80 pF1KE3 ACDKDSQCGGGMCCAVSIWVKSIRICTPMGKLGDSCH-PLTRKVPFFGRRMH-----HTC ::.. .: :.::: . . . .:::. :. :: : .: . .. ... : NP_037 -CDNQRDCQPGLCCAFQRGLL-FPVCTPLPVEGELCHDPASRLLDLITWELEPDGALDRC 210 220 230 240 250 260 90 100 pF1KE3 PCLPGLACLRTSFNR-FICLAQK :: :: : : . ..: NP_037 PCASGLLCQPHSHSLVYVCKPTFVGSRDQDGEILLPREVPDEYEVGSFMEEVRQELEDLE 270 280 290 300 310 320 108 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 17:44:47 2016 done: Sun Nov 6 17:44:48 2016 Total Scan time: 4.450 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]