FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6568, 188 aa 1>>>pF1KE6568 188 - 188 aa - 188 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8427+/-0.000978; mu= 15.5301+/- 0.058 mean_var=61.9813+/-13.090, 0's: 0 Z-trim(103.8): 19 B-trim: 0 in 0/49 Lambda= 0.162909 statistics sampled from 7575 (7583) to 7575 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.605), E-opt: 0.2 (0.233), width: 16 Scan time: 1.140 The best scores are: opt bits E(32554) CCDS2912.1 ARL6IP5 gene_id:10550|Hs108|chr3 ( 188) 1233 298.2 1.9e-81 CCDS14317.1 PRAF2 gene_id:11230|Hs108|chrX ( 178) 548 137.2 5.4e-33 >>CCDS2912.1 ARL6IP5 gene_id:10550|Hs108|chr3 (188 aa) initn: 1233 init1: 1233 opt: 1233 Z-score: 1575.6 bits: 298.2 E(32554): 1.9e-81 Smith-Waterman score: 1233; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188) 10 20 30 40 50 60 pF1KE6 MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISIVGF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISIVGF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 LSPFNMILGGIVVVLVFTGFVWAAHNKDVLRRMKKRYPTTFVMVVMLASYFLISMFGGVM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 LSPFNMILGGIVVVLVFTGFVWAAHNKDVLRRMKKRYPTTFVMVVMLASYFLISMFGGVM 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 VFVFGITFPLLLMFIHASLRLRNLKNKLENKMEGIGLKRTPMGIVLDALEQQEEGINRLT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS29 VFVFGITFPLLLMFIHASLRLRNLKNKLENKMEGIGLKRTPMGIVLDALEQQEEGINRLT 130 140 150 160 170 180 pF1KE6 DYISKVKE :::::::: CCDS29 DYISKVKE >>CCDS14317.1 PRAF2 gene_id:11230|Hs108|chrX (178 aa) initn: 541 init1: 541 opt: 548 Z-score: 705.8 bits: 137.2 E(32554): 5.4e-33 Smith-Waterman score: 548; 45.7% identity (82.7% similar) in 173 aa overlap (2-174:3-175) 10 20 30 40 50 pF1KE6 MDVNIAPLRAWDDFFPGSDRFARPDFRDISKWNNRVVSNLLYYQTNYLVVAAMMISIVG .: . :::: ::: :: :.: :: : ..: .::..::::::::::. .. ....: CCDS14 MSEVRLPPLRALDDFVLGSARLAAPDPCDPQRWCHRVINNLLYYQTNYLLCFGIGLALAG 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE6 FLSPFNMILGGIVVVLVFTGFVWAAHNKDVLRRMKKRYPTTFVMVVMLASYFLISMFGGV .. :.. .:...::.... .::::... ..:: .. .:.. . .:. .. ... . ::. CCDS14 YVRPLHTLLSALVVAVALGVLVWAAETRAAVRRCRRSHPAACLAAVLAVGLLVLWVAGGA 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE6 MVFVFGITFPLLLMFIHASLRLRNLKNKLENKMEGIGLKRTPMGIVLDALEQQEEGINRL .:.:.:. :.::...::::::::::::.:::.:.:::::::::..:.:: :..: CCDS14 CTFLFSIAGPVLLILVHASLRLRNLKNKIENKIESIGLKRTPMGLLLEALGQEQEAGS 130 140 150 160 170 180 pF1KE6 TDYISKVKE 188 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:29:06 2016 done: Tue Nov 8 14:29:06 2016 Total Scan time: 1.140 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]