(Circular) (Six-base) MAPSORT of: pFN21AE3068.seq Check: 8898 from: 1 to: 5377 pFN21AE3068 5377 bp With 182 enzymes: SgfI * March 28, 2012 13:25 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3187 278 Size: 53 83 186 936 1651 2468 Fragments arranged by size: 2468 1651 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2720 1937 Size: 783 4594 Acc65I G'GTAC_C Cuts at: 2698 2698 Size: 5377 AclI AA'CG_TT Cuts at: 1563 3504 3877 1563 Size: 1941 373 3063 Fragments arranged by size: 3063 1941 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2074 3440 4824 5092 1632 Size: 442 1366 1384 268 1917 Fragments arranged by size: 1917 1384 1366 442 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5180 AflIII A'CryG_T Cuts at: 1203 2364 4276 5253 1203 Size: 1161 1912 977 1327 Fragments arranged by size: 1912 1327 1161 977 AgeI A'CCGG_T Cuts at: 4208 4208 Size: 5377 AhdI GACnn_n'nnGTC Cuts at: 4106 4106 Size: 5377 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5377 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5377 AlwNI CAG_nnn'CTG Cuts at: 3120 4692 3120 Size: 1572 3805 ApaI G_GGCC'C Cuts at: 2243 2243 Size: 5377 ApaLI G'TGCA_C Cuts at: 2421 3434 4590 2421 Size: 1013 1156 3208 Fragments arranged by size: 3208 1156 1013 ApoI r'AATT_y Cuts at: 1493 2396 2409 2686 2912 3064 5173 1493 Size: 903 13 277 226 152 2109 1697 Fragments arranged by size: 2109 1697 903 277 226 152 13 AseI AT'TA_AT Cuts at: 160 1032 3931 160 Size: 872 2899 1606 Fragments arranged by size: 2899 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5377 AvaI C'yCGr_G Cuts at: 1870 1943 2702 1870 Size: 73 759 4545 Fragments arranged by size: 4545 759 73 BamHI G'GATC_C Cuts at: 2707 3074 2707 Size: 367 5010 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2698 4153 618 Size: 325 217 627 911 1455 1842 Fragments arranged by size: 1842 1455 911 627 325 217 BanII G_rGCy'C Cuts at: 1391 2243 2696 1391 Size: 852 453 4072 Fragments arranged by size: 4072 852 453 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2265 2536 928 Size: 971 366 271 3769 Fragments arranged by size: 3769 971 366 271 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3568 3602 1903 Size: 34 1631 34 3678 Fragments arranged by size: 3678 1631 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3269 4479 3269 Size: 1210 4167 BclI T'GATC_A Cuts at: 1548 2268 1548 Size: 720 4657 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2119 3988 136 Size: 107 122 71 631 605 447 1869 1525 Fragments arranged by size: 1869 1525 631 605 447 122 107 71 BglII A'GATC_T Cuts at: 5372 5372 Size: 5377 BlpI GC'TnA_GC Cuts at: 2794 2794 Size: 5377 Bme1580I G_kGCm'C Cuts at: 1790 2243 2425 3438 4594 1790 Size: 453 182 1013 1156 2573 Fragments arranged by size: 2573 1156 1013 453 182 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5377 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2531 3108 4066 Size: 416 53 83 399 24 1114 577 958 Cuts at: 4066 442 Size: 1753 Fragments arranged by size: 1753 1114 958 577 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5377 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2394 2663 4037 1239 Size: 1155 269 1374 2579 Fragments arranged by size: 2579 1374 1155 269 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3502 4367 4665 3502 Size: 865 298 4214 Fragments arranged by size: 4214 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4040 882 Size: 617 2541 2219 Fragments arranged by size: 2541 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3168 493 Size: 711 1964 2702 Fragments arranged by size: 2702 1964 711 BsaBI GATnn'nnATC Cuts at: 5371 5371 Size: 5377 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3184 3566 4201 275 Size: 53 83 186 936 1651 382 635 1451 Fragments arranged by size: 1651 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3810 4208 4482 4629 5040 3810 Size: 398 274 147 411 4147 Fragments arranged by size: 4147 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5152 Fragments arranged by size: 5152 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5377 BseYI C'CCAG_C Cuts at: 2188 2344 2538 4580 5076 2188 Size: 156 194 2042 496 2489 Fragments arranged by size: 2489 2042 496 194 156 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4804 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2827 3588 4616 1540 Size: 275 186 826 761 1028 2301 Fragments arranged by size: 2301 1028 826 761 275 186 BsiHKAI G_wGCw'C Cuts at: 2425 3438 3523 4594 2425 Size: 1013 85 1071 3208 Fragments arranged by size: 3208 1071 1013 85 BsmI GAATG_Cn' Cuts at: 2888 2981 2888 Size: 93 5284 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2243 2425 2696 3438 3523 4594 1391 Size: 399 453 182 271 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 453 399 271 182 85 BspEI T'CCGG_A Cuts at: 5040 5040 Size: 5377 BspHI T'CATG_A Cuts at: 2271 3266 4996 2271 Size: 995 1730 2652 Fragments arranged by size: 2652 1730 995 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2732 844 Size: 1888 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3264 1394 Size: 429 1441 3507 Fragments arranged by size: 3507 1441 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3872 4046 65 Size: 1183 2624 174 1396 Fragments arranged by size: 2624 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4021 4208 1700 Size: 110 2211 187 2869 Fragments arranged by size: 2869 2211 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5377 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5377 BssSI C'ACGA_G Cuts at: 3437 4449 3437 Size: 1012 4365 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5377 BstBI TT'CG_AA Cuts at: 2074 4181 2074 Size: 2107 3270 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5377 BstXI CCAn_nnnn'nTGG Cuts at: 2236 2236 Size: 5377 BstYI r'GATC_y Cuts at: 1972 2145 2707 3074 3459 3476 4928 5014 5026 Size: 173 562 367 385 17 1452 86 12 Cuts at: 5026 5372 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 562 385 367 346 173 86 17 12 Bsu36I CC'TnA_GG Cuts at: 2564 2564 Size: 5377 BtgI C'CryG_G Cuts at: 513 1065 2331 513 Size: 552 1266 3559 Fragments arranged by size: 3559 1266 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 2296 487 Size: 683 56 1070 3568 Fragments arranged by size: 3568 1070 683 56 BtsI GCAGTG_nn' Cuts at: 2224 2893 3687 3707 2224 Size: 669 794 20 3894 Fragments arranged by size: 3894 794 669 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5377 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5342 DraI TTT'AAA Cuts at: 2209 2681 2209 Size: 472 4905 DraIII CAC_nnn'GTG Cuts at: 2392 2392 Size: 5377 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 2540 4384 809 Size: 507 1224 1844 1802 Fragments arranged by size: 1844 1802 1224 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2630 2824 3713 Size: 54 1425 50 275 18 800 194 889 Cuts at: 3713 5342 8 Size: 1629 43 Fragments arranged by size: 1629 1425 889 800 275 194 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2824 1537 Size: 275 1012 4090 Fragments arranged by size: 4090 1012 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2492 3307 1353 Size: 1139 815 3423 Fragments arranged by size: 3423 1139 815 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3964 4338 4484 387 Size: 1064 138 2375 374 146 1280 Fragments arranged by size: 2375 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2074 2394 2663 3440 4037 4824 5092 Size: 393 442 320 269 777 597 787 268 Cuts at: 5092 1239 Size: 1524 Fragments arranged by size: 1524 787 777 597 442 393 320 269 268 EcoO109I rG'GnC_Cy Cuts at: 2240 2240 Size: 5377 EcoRI G'AATT_C Cuts at: 2686 3064 2686 Size: 378 4999 FspI TGC'GCA Cuts at: 3883 3883 Size: 5377 HaeII r_GCGC'y Cuts at: 1678 4524 1678 Size: 2846 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2260 2292 2354 2386 4018 Size: 32 135 32 688 32 62 32 1632 Cuts at: 4018 4050 4092 4124 1373 Size: 32 42 32 2626 Fragments arranged by size: 2626 1632 688 135 62 42 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2721 2967 669 Size: 988 281 783 246 3079 Fragments arranged by size: 3079 988 783 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5377 HpaI GTT'AAC Cuts at: 2967 2967 Size: 5377 KpnI G_GTAC'C Cuts at: 2702 2702 Size: 5377 MfeI C'AATT_G Cuts at: 2976 2976 Size: 5377 MluI A'CGCG_T Cuts at: 5253 5253 Size: 5377 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4491 4675 1305 Size: 3186 184 2007 Fragments arranged by size: 3186 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2632 10 Size: 54 1425 343 800 2755 Fragments arranged by size: 2755 1425 800 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2009 2270 3335 3694 3853 518 Size: 648 843 261 1065 359 159 2042 Fragments arranged by size: 2042 1065 843 648 359 261 159 MspA1I CmG'CkG Cuts at: 1606 2538 2793 3470 4618 4863 1606 Size: 932 255 677 1148 245 2120 Fragments arranged by size: 2120 1148 932 677 255 245 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 4825 NdeI CA'TA_TG Cuts at: 387 387 Size: 5377 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5377 NotI GC'GGCC_GC Cuts at: 2824 2824 Size: 5377 NspI r_CATG'y Cuts at: 1132 1229 2368 2662 2735 4280 1132 Size: 97 1139 294 73 1545 2229 Fragments arranged by size: 2229 1545 1139 294 97 73 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5377 PciI A'CATG_T Cuts at: 2364 4276 2364 Size: 1912 3465 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5377 PfoI T'CCnGG_A Cuts at: 2529 2529 Size: 5377 PmeI GTTT'AAAC Cuts at: 2681 2681 Size: 5377 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3446 3478 4959 4991 3446 Size: 32 1481 32 3832 Fragments arranged by size: 3832 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5377 PsiI TTA'TAA Cuts at: 2947 2947 Size: 5377 PspOMI G'GGCC_C Cuts at: 2239 2239 Size: 5377 PstI C_TGCA'G Cuts at: 830 2219 2729 830 Size: 1389 510 3478 Fragments arranged by size: 3478 1389 510 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5377 PvuII CAG'CTG Cuts at: 2538 2538 Size: 5377 SalI G'TCGA_C Cuts at: 1936 2719 1936 Size: 783 4594 SbfI CC_TGCA'GG Cuts at: 2729 2729 Size: 5377 ScaI AGT'ACT Cuts at: 3625 5337 3625 Size: 1712 3665 SfcI C'TryA_G Cuts at: 826 1045 2215 2725 3860 4541 4732 826 Size: 219 1170 510 1135 681 191 1471 Fragments arranged by size: 1471 1170 1135 681 510 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5377 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5377 SmaI CCC'GGG Cuts at: 1872 2704 1872 Size: 832 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3481 4382 4644 820 Size: 197 926 1538 901 262 1553 Fragments arranged by size: 1553 1538 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3168 493 Size: 2675 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5377 SphI G_CATG'C Cuts at: 1132 2662 2735 1132 Size: 1530 73 3774 Fragments arranged by size: 3774 1530 73 SspI AAT'ATT Cuts at: 5 52 3301 5 Size: 47 3249 2081 Fragments arranged by size: 3249 2081 47 StuI AGG'CCT Cuts at: 1517 2304 1517 Size: 787 4590 StyI C'CwwG_G Cuts at: 513 1065 2139 2816 513 Size: 552 1074 677 3074 Fragments arranged by size: 3074 1074 677 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3404 3421 3574 3759 4204 325 Size: 1255 1824 17 153 185 445 1498 Fragments arranged by size: 1824 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2160 2367 3623 Size: 274 80 33 51 1443 183 207 1256 Cuts at: 3623 5335 96 Size: 1712 138 Fragments arranged by size: 1712 1443 1256 274 207 183 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5337 5369 5337 Size: 32 5345 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5377 XbaI T'CTAG_A Cuts at: 2713 2713 Size: 5377 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5377 XmaI C'CCGG_G Cuts at: 1870 2702 1870 Size: 832 4545 XmnI GAAnn'nnTTC Cuts at: 2486 3506 2486 Size: 1020 4357 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3185 276 Size: 53 83 186 936 1651 2468 Fragments arranged by size: 2468 1651 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI EarI EciI Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PfoI PmeI PpiI PshAI PsiI PspOMI PstI PvuI PvuII SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstZ17I EcoICRI EcoNI EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PmlI PpuMI PspXI PsrI RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI