FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3160, 380 aa 1>>>pF1KE3160 380 - 380 aa - 380 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9207+/-0.000383; mu= 19.1729+/- 0.024 mean_var=73.3475+/-14.798, 0's: 0 Z-trim(112.7): 15 B-trim: 29 in 1/48 Lambda= 0.149755 statistics sampled from 21671 (21678) to 21671 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.629), E-opt: 0.2 (0.254), width: 16 Scan time: 8.060 The best scores are: opt bits E(85289) NP_006536 (OMIM: 607072,617116) nitrogen permease ( 380) 2548 560.0 3.3e-159 XP_011531590 (OMIM: 607072,617116) PREDICTED: nitr ( 377) 2161 476.4 4.8e-134 XP_016861044 (OMIM: 607072,617116) PREDICTED: nitr ( 260) 1753 388.1 1.3e-107 XP_005264865 (OMIM: 607072,617116) PREDICTED: nitr ( 260) 1753 388.1 1.3e-107 XP_016861045 (OMIM: 607072,617116) PREDICTED: nitr ( 260) 1753 388.1 1.3e-107 >>NP_006536 (OMIM: 607072,617116) nitrogen permease regu (380 aa) initn: 2548 init1: 2548 opt: 2548 Z-score: 2979.3 bits: 560.0 E(85289): 3.3e-159 Smith-Waterman score: 2548; 100.0% identity (100.0% similar) in 380 aa overlap (1-380:1-380) 10 20 30 40 50 60 pF1KE3 MGSGCRIECIFFSEFHPTLGPKITYQVPEDFISRELFDTVQVYIITKPELQNKLITVTAM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 MGSGCRIECIFFSEFHPTLGPKITYQVPEDFISRELFDTVQVYIITKPELQNKLITVTAM 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 EKKLIGCPVCIEHKKYSRNALLFNLGFVCDAQAKTCALEPIVKKLAGYLTTLELESSFVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 EKKLIGCPVCIEHKKYSRNALLFNLGFVCDAQAKTCALEPIVKKLAGYLTTLELESSFVS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 MEESKQKLVPIMTILLEELNASGRCTLPIDESNTIHLKVIEQRPDPPVAQEYDVPVFTKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 MEESKQKLVPIMTILLEELNASGRCTLPIDESNTIHLKVIEQRPDPPVAQEYDVPVFTKD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 KEDFFNSQWDLTTQQILPYIDGFRHIQKISAEADVELNLVRIAIQNLLYYGVVTLVSILQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 KEDFFNSQWDLTTQQILPYIDGFRHIQKISAEADVELNLVRIAIQNLLYYGVVTLVSILQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 YSNVYCPTPKVQDLVDDKSLQEACLSYVTKQGHKRASLRDVFQLYCSLSPGTTVRDLIGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 YSNVYCPTPKVQDLVDDKSLQEACLSYVTKQGHKRASLRDVFQLYCSLSPGTTVRDLIGR 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 HPQQLQHVDERKLIQFGLMKNLIRRLQKYPVRVTREEQSHPARLYTGCHSYDEICCKTGM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 HPQQLQHVDERKLIQFGLMKNLIRRLQKYPVRVTREEQSHPARLYTGCHSYDEICCKTGM 310 320 330 340 350 360 370 380 pF1KE3 SYHELDERLENDPNIIICWK :::::::::::::::::::: NP_006 SYHELDERLENDPNIIICWK 370 380 >>XP_011531590 (OMIM: 607072,617116) PREDICTED: nitrogen (377 aa) initn: 2155 init1: 2155 opt: 2161 Z-score: 2527.5 bits: 476.4 E(85289): 4.8e-134 Smith-Waterman score: 2161; 89.2% identity (92.5% similar) in 371 aa overlap (15-380:8-377) 10 20 30 40 50 pF1KE3 MGSGCRIECIFFSEFHP----TLGPKITYQVPEDF-ISRELFDTVQVYIITKPELQNKLI .:: : :: :. .:... : .: ..: . . XP_011 MRRSPFVLHPVQMSTEGP-IATPLPRSLKTSSPESCLTQSKCTSSPSQSCRTS 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 TVTAMEKKLIGCPVCIEHKKYSRNALLFNLGFVCDAQAKTCALEPIVKKLAGYLTTLELE .:::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LSLSMEKKLIGCPVCIEHKKYSRNALLFNLGFVCDAQAKTCALEPIVKKLAGYLTTLELE 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 SSFVSMEESKQKLVPIMTILLEELNASGRCTLPIDESNTIHLKVIEQRPDPPVAQEYDVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SSFVSMEESKQKLVPIMTILLEELNASGRCTLPIDESNTIHLKVIEQRPDPPVAQEYDVP 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE3 VFTKDKEDFFNSQWDLTTQQILPYIDGFRHIQKISAEADVELNLVRIAIQNLLYYGVVTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VFTKDKEDFFNSQWDLTTQQILPYIDGFRHIQKISAEADVELNLVRIAIQNLLYYGVVTL 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE3 VSILQYSNVYCPTPKVQDLVDDKSLQEACLSYVTKQGHKRASLRDVFQLYCSLSPGTTVR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 VSILQYSNVYCPTPKVQDLVDDKSLQEACLSYVTKQGHKRASLRDVFQLYCSLSPGTTVR 240 250 260 270 280 290 300 310 320 330 340 350 pF1KE3 DLIGRHPQQLQHVDERKLIQFGLMKNLIRRLQKYPVRVTREEQSHPARLYTGCHSYDEIC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 DLIGRHPQQLQHVDERKLIQFGLMKNLIRRLQKYPVRVTREEQSHPARLYTGCHSYDEIC 300 310 320 330 340 350 360 370 380 pF1KE3 CKTGMSYHELDERLENDPNIIICWK ::::::::::::::::::::::::: XP_011 CKTGMSYHELDERLENDPNIIICWK 360 370 >>XP_016861044 (OMIM: 607072,617116) PREDICTED: nitrogen (260 aa) initn: 1753 init1: 1753 opt: 1753 Z-score: 2053.2 bits: 388.1 E(85289): 1.3e-107 Smith-Waterman score: 1753; 100.0% identity (100.0% similar) in 260 aa overlap (121-380:1-260) 100 110 120 130 140 150 pF1KE3 AQAKTCALEPIVKKLAGYLTTLELESSFVSMEESKQKLVPIMTILLEELNASGRCTLPID :::::::::::::::::::::::::::::: XP_016 MEESKQKLVPIMTILLEELNASGRCTLPID 10 20 30 160 170 180 190 200 210 pF1KE3 ESNTIHLKVIEQRPDPPVAQEYDVPVFTKDKEDFFNSQWDLTTQQILPYIDGFRHIQKIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ESNTIHLKVIEQRPDPPVAQEYDVPVFTKDKEDFFNSQWDLTTQQILPYIDGFRHIQKIS 40 50 60 70 80 90 220 230 240 250 260 270 pF1KE3 AEADVELNLVRIAIQNLLYYGVVTLVSILQYSNVYCPTPKVQDLVDDKSLQEACLSYVTK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 AEADVELNLVRIAIQNLLYYGVVTLVSILQYSNVYCPTPKVQDLVDDKSLQEACLSYVTK 100 110 120 130 140 150 280 290 300 310 320 330 pF1KE3 QGHKRASLRDVFQLYCSLSPGTTVRDLIGRHPQQLQHVDERKLIQFGLMKNLIRRLQKYP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QGHKRASLRDVFQLYCSLSPGTTVRDLIGRHPQQLQHVDERKLIQFGLMKNLIRRLQKYP 160 170 180 190 200 210 340 350 360 370 380 pF1KE3 VRVTREEQSHPARLYTGCHSYDEICCKTGMSYHELDERLENDPNIIICWK :::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VRVTREEQSHPARLYTGCHSYDEICCKTGMSYHELDERLENDPNIIICWK 220 230 240 250 260 >>XP_005264865 (OMIM: 607072,617116) PREDICTED: nitrogen (260 aa) initn: 1753 init1: 1753 opt: 1753 Z-score: 2053.2 bits: 388.1 E(85289): 1.3e-107 Smith-Waterman score: 1753; 100.0% identity (100.0% similar) in 260 aa overlap (121-380:1-260) 100 110 120 130 140 150 pF1KE3 AQAKTCALEPIVKKLAGYLTTLELESSFVSMEESKQKLVPIMTILLEELNASGRCTLPID :::::::::::::::::::::::::::::: XP_005 MEESKQKLVPIMTILLEELNASGRCTLPID 10 20 30 160 170 180 190 200 210 pF1KE3 ESNTIHLKVIEQRPDPPVAQEYDVPVFTKDKEDFFNSQWDLTTQQILPYIDGFRHIQKIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 ESNTIHLKVIEQRPDPPVAQEYDVPVFTKDKEDFFNSQWDLTTQQILPYIDGFRHIQKIS 40 50 60 70 80 90 220 230 240 250 260 270 pF1KE3 AEADVELNLVRIAIQNLLYYGVVTLVSILQYSNVYCPTPKVQDLVDDKSLQEACLSYVTK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 AEADVELNLVRIAIQNLLYYGVVTLVSILQYSNVYCPTPKVQDLVDDKSLQEACLSYVTK 100 110 120 130 140 150 280 290 300 310 320 330 pF1KE3 QGHKRASLRDVFQLYCSLSPGTTVRDLIGRHPQQLQHVDERKLIQFGLMKNLIRRLQKYP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 QGHKRASLRDVFQLYCSLSPGTTVRDLIGRHPQQLQHVDERKLIQFGLMKNLIRRLQKYP 160 170 180 190 200 210 340 350 360 370 380 pF1KE3 VRVTREEQSHPARLYTGCHSYDEICCKTGMSYHELDERLENDPNIIICWK :::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 VRVTREEQSHPARLYTGCHSYDEICCKTGMSYHELDERLENDPNIIICWK 220 230 240 250 260 >>XP_016861045 (OMIM: 607072,617116) PREDICTED: nitrogen (260 aa) initn: 1753 init1: 1753 opt: 1753 Z-score: 2053.2 bits: 388.1 E(85289): 1.3e-107 Smith-Waterman score: 1753; 100.0% identity (100.0% similar) in 260 aa overlap (121-380:1-260) 100 110 120 130 140 150 pF1KE3 AQAKTCALEPIVKKLAGYLTTLELESSFVSMEESKQKLVPIMTILLEELNASGRCTLPID :::::::::::::::::::::::::::::: XP_016 MEESKQKLVPIMTILLEELNASGRCTLPID 10 20 30 160 170 180 190 200 210 pF1KE3 ESNTIHLKVIEQRPDPPVAQEYDVPVFTKDKEDFFNSQWDLTTQQILPYIDGFRHIQKIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ESNTIHLKVIEQRPDPPVAQEYDVPVFTKDKEDFFNSQWDLTTQQILPYIDGFRHIQKIS 40 50 60 70 80 90 220 230 240 250 260 270 pF1KE3 AEADVELNLVRIAIQNLLYYGVVTLVSILQYSNVYCPTPKVQDLVDDKSLQEACLSYVTK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 AEADVELNLVRIAIQNLLYYGVVTLVSILQYSNVYCPTPKVQDLVDDKSLQEACLSYVTK 100 110 120 130 140 150 280 290 300 310 320 330 pF1KE3 QGHKRASLRDVFQLYCSLSPGTTVRDLIGRHPQQLQHVDERKLIQFGLMKNLIRRLQKYP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QGHKRASLRDVFQLYCSLSPGTTVRDLIGRHPQQLQHVDERKLIQFGLMKNLIRRLQKYP 160 170 180 190 200 210 340 350 360 370 380 pF1KE3 VRVTREEQSHPARLYTGCHSYDEICCKTGMSYHELDERLENDPNIIICWK :::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VRVTREEQSHPARLYTGCHSYDEICCKTGMSYHELDERLENDPNIIICWK 220 230 240 250 260 380 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 17:47:02 2016 done: Sun Nov 6 17:47:03 2016 Total Scan time: 8.060 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]