FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1930, 469 aa 1>>>pF1KE1930 469 - 469 aa - 469 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.7237+/-0.00125; mu= -1.3319+/- 0.074 mean_var=311.9754+/-65.321, 0's: 0 Z-trim(110.0): 23 B-trim: 91 in 2/52 Lambda= 0.072613 statistics sampled from 11290 (11299) to 11290 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.347), width: 16 Scan time: 3.430 The best scores are: opt bits E(32554) CCDS2806.1 TRAIP gene_id:10293|Hs108|chr3 ( 469) 3069 335.5 7.3e-92 >>CCDS2806.1 TRAIP gene_id:10293|Hs108|chr3 (469 aa) initn: 3069 init1: 3069 opt: 3069 Z-score: 1762.7 bits: 335.5 E(32554): 7.3e-92 Smith-Waterman score: 3069; 100.0% identity (100.0% similar) in 469 aa overlap (1-469:1-469) 10 20 30 40 50 60 pF1KE1 MPIRALCTICSDFFDHSRDVAAIHCGHTFHLQCLIQWFETAPSRTCPQCRIQVGKRTIIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS28 MPIRALCTICSDFFDHSRDVAAIHCGHTFHLQCLIQWFETAPSRTCPQCRIQVGKRTIIN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 KLFFDLAQEEENVLDAEFLKNELDNVRAQLSQKDKEKRDSQVIIDTLRDTLEERNATVVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS28 KLFFDLAQEEENVLDAEFLKNELDNVRAQLSQKDKEKRDSQVIIDTLRDTLEERNATVVS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 LQQALGKAEMLCSTLKKQMKYLEQQQDETKQAQEEARRLRSKMKTMEQIELLLQSQRPEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS28 LQQALGKAEMLCSTLKKQMKYLEQQQDETKQAQEEARRLRSKMKTMEQIELLLQSQRPEV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 EEMIRDMGVGQSAVEQLAVYCVSLKKEYENLKEARKASGEVADKLRKDLFSSRSKLQTVY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS28 EEMIRDMGVGQSAVEQLAVYCVSLKKEYENLKEARKASGEVADKLRKDLFSSRSKLQTVY 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 SELDQAKLELKSAQKDLQSADKEIMSLKKKLTMLQETLNLPPVASETVDRLVLESPAPVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS28 SELDQAKLELKSAQKDLQSADKEIMSLKKKLTMLQETLNLPPVASETVDRLVLESPAPVE 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 VNLKLRRPSFRDDIDLNATFDVDTPPARPSSSQHGYYEKLCLEKSHSPIQDVPKKICKGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS28 VNLKLRRPSFRDDIDLNATFDVDTPPARPSSSQHGYYEKLCLEKSHSPIQDVPKKICKGP 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 RKESQLSLGGQSCAGEPDEELVGAFPIFVRNAILGQKQPKRPRSESSCSKDVVRTGFDGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS28 RKESQLSLGGQSCAGEPDEELVGAFPIFVRNAILGQKQPKRPRSESSCSKDVVRTGFDGL 370 380 390 400 410 420 430 440 450 460 pF1KE1 GGRTKFIQPTDTVMIRPLPVKPKTKVKQRVRVKTVPSLFQAKLDTFLWS ::::::::::::::::::::::::::::::::::::::::::::::::: CCDS28 GGRTKFIQPTDTVMIRPLPVKPKTKVKQRVRVKTVPSLFQAKLDTFLWS 430 440 450 460 469 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 17:47:39 2016 done: Sun Nov 6 17:47:40 2016 Total Scan time: 3.430 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]