FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6532, 184 aa 1>>>pF1KE6532 184 - 184 aa - 184 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0279+/-0.000272; mu= 14.1780+/- 0.017 mean_var=57.5832+/-11.384, 0's: 0 Z-trim(119.1): 25 B-trim: 0 in 0/55 Lambda= 0.169015 statistics sampled from 32678 (32703) to 32678 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.757), E-opt: 0.2 (0.383), width: 16 Scan time: 5.440 The best scores are: opt bits E(85289) NP_951032 (OMIM: 252010,612911) NADH dehydrogenase ( 184) 1243 310.5 9.8e-85 NP_951047 (OMIM: 252010,612911) NADH dehydrogenase ( 127) 859 216.8 1.1e-56 NP_951056 (OMIM: 252010,612911) NADH dehydrogenase ( 127) 859 216.8 1.1e-56 NP_951033 (OMIM: 252010,612911) NADH dehydrogenase ( 127) 859 216.8 1.1e-56 >>NP_951032 (OMIM: 252010,612911) NADH dehydrogenase [ub (184 aa) initn: 1243 init1: 1243 opt: 1243 Z-score: 1642.3 bits: 310.5 E(85289): 9.8e-85 Smith-Waterman score: 1243; 100.0% identity (100.0% similar) in 184 aa overlap (1-184:1-184) 10 20 30 40 50 60 pF1KE6 MATALALRSLYRARPSLRCPPVELPWAPRRGHRLSPADDELYQRTRISLLQREAAQAMYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_951 MATALALRSLYRARPSLRCPPVELPWAPRRGHRLSPADDELYQRTRISLLQREAAQAMYI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 DSYNSRGFMINGNRVLGPCALLPHSVVQWNVGSHQDITEDSFSLFWLLEPRIEIVVVGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_951 DSYNSRGFMINGNRVLGPCALLPHSVVQWNVGSHQDITEDSFSLFWLLEPRIEIVVVGTG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 DRTERLQSQVLQAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIPPPGGTSLTSLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_951 DRTERLQSQVLQAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIPPPGGTSLTSLG 130 140 150 160 170 180 pF1KE6 QAAQ :::: NP_951 QAAQ >>NP_951047 (OMIM: 252010,612911) NADH dehydrogenase [ub (127 aa) initn: 859 init1: 859 opt: 859 Z-score: 1138.7 bits: 216.8 E(85289): 1.1e-56 Smith-Waterman score: 859; 100.0% identity (100.0% similar) in 127 aa overlap (58-184:1-127) 30 40 50 60 70 80 pF1KE6 PRRGHRLSPADDELYQRTRISLLQREAAQAMYIDSYNSRGFMINGNRVLGPCALLPHSVV :::::::::::::::::::::::::::::: NP_951 MYIDSYNSRGFMINGNRVLGPCALLPHSVV 10 20 30 90 100 110 120 130 140 pF1KE6 QWNVGSHQDITEDSFSLFWLLEPRIEIVVVGTGDRTERLQSQVLQAMRQRGIAVEVQDTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_951 QWNVGSHQDITEDSFSLFWLLEPRIEIVVVGTGDRTERLQSQVLQAMRQRGIAVEVQDTP 40 50 60 70 80 90 150 160 170 180 pF1KE6 NACATFNFLCHEGRVTGAALIPPPGGTSLTSLGQAAQ ::::::::::::::::::::::::::::::::::::: NP_951 NACATFNFLCHEGRVTGAALIPPPGGTSLTSLGQAAQ 100 110 120 >>NP_951056 (OMIM: 252010,612911) NADH dehydrogenase [ub (127 aa) initn: 859 init1: 859 opt: 859 Z-score: 1138.7 bits: 216.8 E(85289): 1.1e-56 Smith-Waterman score: 859; 100.0% identity (100.0% similar) in 127 aa overlap (58-184:1-127) 30 40 50 60 70 80 pF1KE6 PRRGHRLSPADDELYQRTRISLLQREAAQAMYIDSYNSRGFMINGNRVLGPCALLPHSVV :::::::::::::::::::::::::::::: NP_951 MYIDSYNSRGFMINGNRVLGPCALLPHSVV 10 20 30 90 100 110 120 130 140 pF1KE6 QWNVGSHQDITEDSFSLFWLLEPRIEIVVVGTGDRTERLQSQVLQAMRQRGIAVEVQDTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_951 QWNVGSHQDITEDSFSLFWLLEPRIEIVVVGTGDRTERLQSQVLQAMRQRGIAVEVQDTP 40 50 60 70 80 90 150 160 170 180 pF1KE6 NACATFNFLCHEGRVTGAALIPPPGGTSLTSLGQAAQ ::::::::::::::::::::::::::::::::::::: NP_951 NACATFNFLCHEGRVTGAALIPPPGGTSLTSLGQAAQ 100 110 120 >>NP_951033 (OMIM: 252010,612911) NADH dehydrogenase [ub (127 aa) initn: 859 init1: 859 opt: 859 Z-score: 1138.7 bits: 216.8 E(85289): 1.1e-56 Smith-Waterman score: 859; 100.0% identity (100.0% similar) in 127 aa overlap (58-184:1-127) 30 40 50 60 70 80 pF1KE6 PRRGHRLSPADDELYQRTRISLLQREAAQAMYIDSYNSRGFMINGNRVLGPCALLPHSVV :::::::::::::::::::::::::::::: NP_951 MYIDSYNSRGFMINGNRVLGPCALLPHSVV 10 20 30 90 100 110 120 130 140 pF1KE6 QWNVGSHQDITEDSFSLFWLLEPRIEIVVVGTGDRTERLQSQVLQAMRQRGIAVEVQDTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_951 QWNVGSHQDITEDSFSLFWLLEPRIEIVVVGTGDRTERLQSQVLQAMRQRGIAVEVQDTP 40 50 60 70 80 90 150 160 170 180 pF1KE6 NACATFNFLCHEGRVTGAALIPPPGGTSLTSLGQAAQ ::::::::::::::::::::::::::::::::::::: NP_951 NACATFNFLCHEGRVTGAALIPPPGGTSLTSLGQAAQ 100 110 120 184 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:09:41 2016 done: Tue Nov 8 14:09:42 2016 Total Scan time: 5.440 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]