FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1653, 170 aa 1>>>pF1KE1653 170 - 170 aa - 170 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4350+/-0.000296; mu= 12.2621+/- 0.018 mean_var=68.5095+/-13.689, 0's: 0 Z-trim(118.0): 4 B-trim: 42 in 1/52 Lambda= 0.154953 statistics sampled from 30482 (30483) to 30482 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.741), E-opt: 0.2 (0.357), width: 16 Scan time: 5.850 The best scores are: opt bits E(85289) NP_004336 (OMIM: 600474) cathelicidin antimicrobia ( 173) 1133 261.4 5e-70 >>NP_004336 (OMIM: 600474) cathelicidin antimicrobial pe (173 aa) initn: 1133 init1: 1133 opt: 1133 Z-score: 1378.2 bits: 261.4 E(85289): 5e-70 Smith-Waterman score: 1133; 100.0% identity (100.0% similar) in 170 aa overlap (1-170:4-173) 10 20 30 40 50 pF1KE1 MKTQRDGHSLGRWSLVLLLLGLVMPLAIIAQVLSYKEAVLRAIDGINQRSSDANLYR ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MGTMKTQRDGHSLGRWSLVLLLLGLVMPLAIIAQVLSYKEAVLRAIDGINQRSSDANLYR 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 LLDLDPRPTMDGDPDTPKPVSFTVKETVCPRTTQQSPEDCDFKKDGLVKRCMGTVTLNQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 LLDLDPRPTMDGDPDTPKPVSFTVKETVCPRTTQQSPEDCDFKKDGLVKRCMGTVTLNQA 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 RGSFDISCDKDNKRFALLGDFFRKSKEKIGKEFKRIVQRIKDFLRNLVPRTES ::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 RGSFDISCDKDNKRFALLGDFFRKSKEKIGKEFKRIVQRIKDFLRNLVPRTES 130 140 150 160 170 170 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 17:49:23 2016 done: Sun Nov 6 17:49:23 2016 Total Scan time: 5.850 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]