(Circular) (Six-base) MAPSORT of: pFN21AE1669.seq Check: 1041 from: 1 to: 5269 pFN21AE1669 5269 bp With 182 enzymes: SgfI * August 16, 2010 14:48 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3079 278 Size: 53 83 186 936 1543 2468 Fragments arranged by size: 2468 1543 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2612 1937 Size: 675 4594 Acc65I G'GTAC_C Cuts at: 2590 2590 Size: 5269 AclI AA'CG_TT Cuts at: 1563 3396 3769 1563 Size: 1833 373 3063 Fragments arranged by size: 3063 1833 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2125 3332 4716 4984 1632 Size: 493 1207 1384 268 1917 Fragments arranged by size: 1917 1384 1207 493 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5072 AflIII A'CryG_T Cuts at: 1203 4168 5145 1203 Size: 2965 977 1327 Fragments arranged by size: 2965 1327 977 AgeI A'CCGG_T Cuts at: 4100 4100 Size: 5269 AhdI GACnn_n'nnGTC Cuts at: 3998 3998 Size: 5269 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5269 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5269 AlwNI CAG_nnn'CTG Cuts at: 2247 3012 4584 2247 Size: 765 1572 2932 Fragments arranged by size: 2932 1572 765 ApaLI G'TGCA_C Cuts at: 3326 4482 3326 Size: 1156 4113 ApoI r'AATT_y Cuts at: 1493 2108 2578 2804 2956 5065 1493 Size: 615 470 226 152 2109 1697 Fragments arranged by size: 2109 1697 615 470 226 152 AseI AT'TA_AT Cuts at: 160 1032 3823 160 Size: 872 2791 1606 Fragments arranged by size: 2791 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5269 AvaI C'yCGr_G Cuts at: 1870 1943 2124 2594 1870 Size: 73 181 470 4545 Fragments arranged by size: 4545 470 181 73 BamHI G'GATC_C Cuts at: 2599 2966 2599 Size: 367 4902 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2590 4045 618 Size: 325 217 627 803 1455 1842 Fragments arranged by size: 1842 1455 803 627 325 217 BanII G_rGCy'C Cuts at: 1391 2588 1391 Size: 1197 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2184 928 Size: 971 285 4013 Fragments arranged by size: 4013 971 285 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3460 3494 1903 Size: 34 1523 34 3678 Fragments arranged by size: 3678 1523 34 34 BciVI GTATCCnnnnn_n' Cuts at: 2123 2211 3161 4371 2123 Size: 88 950 1210 3021 Fragments arranged by size: 3021 1210 950 88 BclI T'GATC_A Cuts at: 1548 1548 Size: 5269 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 3880 136 Size: 107 122 71 631 605 2208 1525 Fragments arranged by size: 2208 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5264 5264 Size: 5269 BlpI GC'TnA_GC Cuts at: 2686 2686 Size: 5269 Bme1580I G_kGCm'C Cuts at: 1790 2361 3330 4486 1790 Size: 571 969 1156 2573 Fragments arranged by size: 2573 1156 969 571 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5269 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2087 3000 3958 Size: 416 53 83 399 24 670 913 958 Cuts at: 3958 442 Size: 1753 Fragments arranged by size: 1753 958 913 670 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5269 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2478 3929 1239 Size: 1239 1451 2579 Fragments arranged by size: 2579 1451 1239 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3394 4259 4557 3394 Size: 865 298 4106 Fragments arranged by size: 4106 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 3932 882 Size: 617 2433 2219 Fragments arranged by size: 2433 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 2516 3060 493 Size: 711 1312 544 2702 Fragments arranged by size: 2702 1312 711 544 BsaBI GATnn'nnATC Cuts at: 2048 5263 2048 Size: 3215 2054 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3076 3458 4093 275 Size: 53 83 186 936 1543 382 635 1451 Fragments arranged by size: 1543 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3702 4100 4374 4521 4932 3702 Size: 398 274 147 411 4039 Fragments arranged by size: 4039 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5044 Fragments arranged by size: 5044 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2183 1186 Size: 997 4272 BseYI C'CCAG_C Cuts at: 2095 2196 2275 4472 4968 2095 Size: 101 79 2197 496 2396 Fragments arranged by size: 2396 2197 496 101 79 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2496 1163 Size: 573 760 3936 Fragments arranged by size: 3936 760 573 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2719 3480 4508 1540 Size: 275 186 718 761 1028 2301 Fragments arranged by size: 2301 1028 761 718 275 186 BsiHKAI G_wGCw'C Cuts at: 2328 2475 3330 3415 4486 2328 Size: 147 855 85 1071 3111 Fragments arranged by size: 3111 1071 855 147 85 BsmI GAATG_Cn' Cuts at: 2780 2873 2780 Size: 93 5176 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2328 2361 2475 2588 3330 3415 4486 Size: 399 538 33 114 113 742 85 1071 Cuts at: 4486 1391 Size: 2174 Fragments arranged by size: 2174 1071 742 538 399 114 113 85 33 BspEI T'CCGG_A Cuts at: 4932 4932 Size: 5269 BspHI T'CATG_A Cuts at: 3158 4888 3158 Size: 1730 3539 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2255 2276 2624 844 Size: 1411 21 348 3489 Fragments arranged by size: 3489 1411 348 21 BsrBI CCG'CTC Cuts at: 1394 1823 3156 1394 Size: 429 1333 3507 Fragments arranged by size: 3507 1333 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3764 3938 65 Size: 1183 2516 174 1396 Fragments arranged by size: 2516 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 3913 4100 1700 Size: 110 2103 187 2869 Fragments arranged by size: 2869 2103 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5269 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5269 BssSI C'ACGA_G Cuts at: 2477 3329 4341 2477 Size: 852 1012 3405 Fragments arranged by size: 3405 1012 852 BstAPI GCAn_nnn'nTGC Cuts at: 794 2332 794 Size: 1538 3731 BstBI TT'CG_AA Cuts at: 4073 4073 Size: 5269 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5269 BstYI r'GATC_y Cuts at: 1972 2599 2966 3351 3368 4820 4906 4918 5264 Size: 627 367 385 17 1452 86 12 346 Cuts at: 5264 1972 Size: 1977 Fragments arranged by size: 1977 1452 627 385 367 346 86 17 12 Bsu36I CC'TnA_GG Cuts at: 2430 2430 Size: 5269 BtgI C'CryG_G Cuts at: 513 1065 2004 2211 513 Size: 552 939 207 3571 Fragments arranged by size: 3571 939 552 207 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4530 Fragments arranged by size: 4530 683 56 BtsI GCAGTG_nn' Cuts at: 2785 3579 3599 2785 Size: 794 20 4455 Fragments arranged by size: 4455 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5269 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5234 DraI TTT'AAA Cuts at: 2573 2573 Size: 5269 DraIII CAC_nnn'GTG Cuts at: 2332 2479 2332 Size: 147 5122 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4276 809 Size: 507 2960 1802 Fragments arranged by size: 2960 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2055 2716 3605 Size: 54 1425 50 275 18 225 661 889 Cuts at: 3605 5234 8 Size: 1629 43 Fragments arranged by size: 1629 1425 889 661 275 225 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2716 1537 Size: 275 904 4090 Fragments arranged by size: 4090 904 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3199 1353 Size: 1846 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3856 4230 4376 387 Size: 1064 138 2267 374 146 1280 Fragments arranged by size: 2267 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2125 2478 3332 3929 4716 4984 1239 Size: 393 493 353 854 597 787 268 1524 Fragments arranged by size: 1524 854 787 597 493 393 353 268 EcoO109I rG'GnC_Cy Cuts at: 2280 2280 Size: 5269 EcoRI G'AATT_C Cuts at: 2578 2956 2578 Size: 378 4891 FspI TGC'GCA Cuts at: 2336 3775 2336 Size: 1439 3830 HaeII r_GCGC'y Cuts at: 1678 4416 1678 Size: 2738 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 3910 3942 3984 4016 1373 Size: 32 135 32 2338 32 42 32 2626 Fragments arranged by size: 2626 2338 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2613 2859 669 Size: 988 281 675 246 3079 Fragments arranged by size: 3079 988 675 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5269 HpaI GTT'AAC Cuts at: 2859 2859 Size: 5269 KpnI G_GTAC'C Cuts at: 2594 2594 Size: 5269 MfeI C'AATT_G Cuts at: 2868 2868 Size: 5269 MluI A'CGCG_T Cuts at: 5145 5145 Size: 5269 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4383 4567 1305 Size: 3078 184 2007 Fragments arranged by size: 3078 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2057 10 Size: 54 1425 343 225 3222 Fragments arranged by size: 3222 1425 343 225 54 MslI CAynn'nnrTG Cuts at: 518 1166 2528 3227 3586 3745 518 Size: 648 1362 699 359 159 2042 Fragments arranged by size: 2042 1362 699 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2421 2685 3362 4510 4755 1606 Size: 815 264 677 1148 245 2120 Fragments arranged by size: 2120 1148 815 677 264 245 NcoI C'CATG_G Cuts at: 513 1065 2004 2211 513 Size: 552 939 207 3571 Fragments arranged by size: 3571 939 552 207 NdeI CA'TA_TG Cuts at: 387 387 Size: 5269 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5269 NotI GC'GGCC_GC Cuts at: 2716 2716 Size: 5269 NspI r_CATG'y Cuts at: 1132 1229 2275 2627 4172 1132 Size: 97 1046 352 1545 2229 Fragments arranged by size: 2229 1545 1046 352 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5269 PciI A'CATG_T Cuts at: 4168 4168 Size: 5269 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5269 PfoI T'CCnGG_A Cuts at: 2486 2486 Size: 5269 PmeI GTTT'AAAC Cuts at: 2573 2573 Size: 5269 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3338 3370 4851 4883 3338 Size: 32 1481 32 3724 Fragments arranged by size: 3724 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2280 2280 Size: 5269 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5269 PsiI TTA'TAA Cuts at: 2839 2839 Size: 5269 PstI C_TGCA'G Cuts at: 830 2015 2621 830 Size: 1185 606 3478 Fragments arranged by size: 3478 1185 606 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5269 SalI G'TCGA_C Cuts at: 1936 2611 1936 Size: 675 4594 SbfI CC_TGCA'GG Cuts at: 2621 2621 Size: 5269 ScaI AGT'ACT Cuts at: 3517 5229 3517 Size: 1712 3557 SfcI C'TryA_G Cuts at: 826 1045 2011 2617 3752 4433 4624 826 Size: 219 966 606 1135 681 191 1471 Fragments arranged by size: 1471 1135 966 681 606 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5269 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5269 SmaI CCC'GGG Cuts at: 1872 2596 1872 Size: 724 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3373 4274 4536 820 Size: 197 926 1430 901 262 1553 Fragments arranged by size: 1553 1430 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3060 493 Size: 2567 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5269 SphI G_CATG'C Cuts at: 1132 2275 2627 1132 Size: 1143 352 3774 Fragments arranged by size: 3774 1143 352 SspI AAT'ATT Cuts at: 5 52 3193 5 Size: 47 3141 2081 Fragments arranged by size: 3141 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5269 StyI C'CwwG_G Cuts at: 513 1065 2004 2211 2708 513 Size: 552 939 207 497 3074 Fragments arranged by size: 3074 939 552 497 207 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2178 3296 3313 3466 3651 4096 325 Size: 1255 598 1118 17 153 185 445 1498 Fragments arranged by size: 1498 1255 1118 598 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3515 5227 96 Size: 274 80 33 51 1443 1538 1712 138 Fragments arranged by size: 1712 1538 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5229 5261 5229 Size: 32 5237 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5269 XbaI T'CTAG_A Cuts at: 2605 2605 Size: 5269 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5269 XmaI C'CCGG_G Cuts at: 1870 2594 1870 Size: 724 4545 XmnI GAAnn'nnTTC Cuts at: 3398 3398 Size: 5269 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3077 276 Size: 53 83 186 936 1543 2468 Fragments arranged by size: 2468 1543 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI EarI EciI Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PfoI PmeI PpiI PpuMI PshAI PsiI PstI PvuI SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I EcoICRI EcoNI EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PmlI PspOMI PspXI PsrI PvuII RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI