FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1669, 188 aa 1>>>pF1KE1669 188 - 188 aa - 188 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3291+/-0.000303; mu= 14.3516+/- 0.019 mean_var=119.5009+/-22.887, 0's: 0 Z-trim(120.1): 103 B-trim: 147 in 1/48 Lambda= 0.117324 statistics sampled from 34867 (35018) to 34867 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.411), width: 16 Scan time: 5.420 The best scores are: opt bits E(85289) NP_003203 (OMIM: 187395) teratocarcinoma-derived g ( 188) 1382 244.0 1.1e-64 NP_001167607 (OMIM: 187395) teratocarcinoma-derive ( 172) 1266 224.3 8.2e-59 NP_115934 (OMIM: 217095,605194,605376,613853) cryp ( 223) 319 64.2 1.7e-10 XP_011517019 (OMIM: 109730,190198,616028) PREDICTE (2314) 182 42.2 0.0072 NP_060087 (OMIM: 109730,190198,616028) neurogenic (2555) 182 42.3 0.0076 >>NP_003203 (OMIM: 187395) teratocarcinoma-derived growt (188 aa) initn: 1382 init1: 1382 opt: 1382 Z-score: 1282.5 bits: 244.0 E(85289): 1.1e-64 Smith-Waterman score: 1382; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188) 10 20 30 40 50 60 pF1KE1 MDCRKMARFSYSVIWIMAISKVFELGLVAGLGHQEFARPSRGYLAFRDDSIWPQEEPAIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MDCRKMARFSYSVIWIMAISKVFELGLVAGLGHQEFARPSRGYLAFRDDSIWPQEEPAIR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 PRSSQRVPPMGIQHSKELNRTCCLNGGTCMLGSFCACPPSFYGRNCEHDVRKENCGSVPH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 PRSSQRVPPMGIQHSKELNRTCCLNGGTCMLGSFCACPPSFYGRNCEHDVRKENCGSVPH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 DTWLPKKCSLCKCWHGQLRCFPQAFLPGCDGLVMDEHLVASRTPELPPSARTTTFMLVGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 DTWLPKKCSLCKCWHGQLRCFPQAFLPGCDGLVMDEHLVASRTPELPPSARTTTFMLVGI 130 140 150 160 170 180 pF1KE1 CLSIQSYY :::::::: NP_003 CLSIQSYY >>NP_001167607 (OMIM: 187395) teratocarcinoma-derived gr (172 aa) initn: 1266 init1: 1266 opt: 1266 Z-score: 1176.8 bits: 224.3 E(85289): 8.2e-59 Smith-Waterman score: 1266; 100.0% identity (100.0% similar) in 172 aa overlap (17-188:1-172) 10 20 30 40 50 60 pF1KE1 MDCRKMARFSYSVIWIMAISKVFELGLVAGLGHQEFARPSRGYLAFRDDSIWPQEEPAIR :::::::::::::::::::::::::::::::::::::::::::: NP_001 MAISKVFELGLVAGLGHQEFARPSRGYLAFRDDSIWPQEEPAIR 10 20 30 40 70 80 90 100 110 120 pF1KE1 PRSSQRVPPMGIQHSKELNRTCCLNGGTCMLGSFCACPPSFYGRNCEHDVRKENCGSVPH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PRSSQRVPPMGIQHSKELNRTCCLNGGTCMLGSFCACPPSFYGRNCEHDVRKENCGSVPH 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE1 DTWLPKKCSLCKCWHGQLRCFPQAFLPGCDGLVMDEHLVASRTPELPPSARTTTFMLVGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DTWLPKKCSLCKCWHGQLRCFPQAFLPGCDGLVMDEHLVASRTPELPPSARTTTFMLVGI 110 120 130 140 150 160 pF1KE1 CLSIQSYY :::::::: NP_001 CLSIQSYY 170 >>NP_115934 (OMIM: 217095,605194,605376,613853) cryptic (223 aa) initn: 336 init1: 316 opt: 319 Z-score: 309.3 bits: 64.2 E(85289): 1.7e-10 Smith-Waterman score: 319; 37.7% identity (58.5% similar) in 130 aa overlap (52-181:68-184) 30 40 50 60 70 80 pF1KE1 VFELGLVAGLGHQEFARPSRGYLAFRDDSIWPQEEPAIRPRSSQRVPPMGIQHSKELNRT : ::: : : :. : . . NP_115 VTKVATQKHRQSPLNWTSSHFGEVTGSAEGWGPEEPL--PYS--RAFGEGASARPR---- 40 50 60 70 80 90 100 110 120 130 140 pF1KE1 CCLNGGTCMLGSFCACPPSFYGRNCEHDVRKENCGSVPHDTWLPKKCSLCKCWHGQLRCF :: :::::.:::::.:: : :: :::: :. .::.. : .: . : ::.: : :.:. NP_115 CCRNGGTCVLGSFCVCPAHFTGRYCEHDQRRSECGALEHGAWTLRACHLCRCIFGALHCL 90 100 110 120 130 140 150 160 170 180 pF1KE1 PQAFLPGCDGLVMDEHLVASRTPELPPSARTTTFMLVGICLSIQSYY : :: . ..::.. . : .. . ...:. : NP_115 PLQTPDRCD----PKDFLASHA-HGPSAGGAPSLLLLLPCALLHRLLRPDAPAHPRSLVP 150 160 170 180 190 200 NP_115 SVLQRERRPCGRPGLGHRL 210 220 >>XP_011517019 (OMIM: 109730,190198,616028) PREDICTED: n (2314 aa) initn: 102 init1: 93 opt: 182 Z-score: 172.5 bits: 42.2 E(85289): 0.0072 Smith-Waterman score: 182; 37.9% identity (60.9% similar) in 87 aa overlap (74-153:742-819) 50 60 70 80 90 100 pF1KE1 LAFRDDSIWPQEEPAIRPRSSQRVPPMGIQHSKELNRTCCLNGGTCMLG--SF-CACPPS .. . ... :.:::::. : :: : :::. XP_011 PCRNGANCTDCVDSYTCTCPAGFSGIHCENNTPDCTESSCFNGGTCVDGINSFTCLCPPG 720 730 740 750 760 770 110 120 130 140 150 pF1KE1 FYGRNCEHDVRKENCGSVP--HDTWLPKKCSLCKCWHGQLRCF-PQAFL-PGCDGLVMDE : : :.::: ..: : : : . :. :. :: ::.. :.:..:: XP_011 FTGSYCQHDV--NECDSQPCLHG-------GTCQDGCGSYRCTCPQGYTGPNCQNLVHWC 780 790 800 810 820 160 170 180 pF1KE1 HLVASRTPELPPSARTTTFMLVGICLSIQSYY XP_011 DSSPCKNGGKCWQTHTQYRCECPSGWTGLYCDVPSVSCEVAAQRQGVDVARLCQHGGLCV 830 840 850 860 870 880 >>NP_060087 (OMIM: 109730,190198,616028) neurogenic locu (2555 aa) initn: 119 init1: 93 opt: 182 Z-score: 172.1 bits: 42.3 E(85289): 0.0076 Smith-Waterman score: 182; 37.9% identity (60.9% similar) in 87 aa overlap (74-153:983-1060) 50 60 70 80 90 100 pF1KE1 LAFRDDSIWPQEEPAIRPRSSQRVPPMGIQHSKELNRTCCLNGGTCMLG--SF-CACPPS .. . ... :.:::::. : :: : :::. NP_060 PCRNGANCTDCVDSYTCTCPAGFSGIHCENNTPDCTESSCFNGGTCVDGINSFTCLCPPG 960 970 980 990 1000 1010 110 120 130 140 150 pF1KE1 FYGRNCEHDVRKENCGSVP--HDTWLPKKCSLCKCWHGQLRCF-PQAFL-PGCDGLVMDE : : :.::: ..: : : : . :. :. :: ::.. :.:..:: NP_060 FTGSYCQHDV--NECDSQPCLHG-------GTCQDGCGSYRCTCPQGYTGPNCQNLVHWC 1020 1030 1040 1050 1060 160 170 180 pF1KE1 HLVASRTPELPPSARTTTFMLVGICLSIQSYY NP_060 DSSPCKNGGKCWQTHTQYRCECPSGWTGLYCDVPSVSCEVAAQRQGVDVARLCQHGGLCV 1070 1080 1090 1100 1110 1120 188 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 17:50:41 2016 done: Sun Nov 6 17:50:42 2016 Total Scan time: 5.420 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]