FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1669, 188 aa 1>>>pF1KE1669 188 - 188 aa - 188 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2410+/-0.000714; mu= 14.7134+/- 0.043 mean_var=106.6168+/-19.995, 0's: 0 Z-trim(113.1): 69 B-trim: 15 in 1/49 Lambda= 0.124211 statistics sampled from 13716 (13791) to 13716 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.79), E-opt: 0.2 (0.424), width: 16 Scan time: 2.070 The best scores are: opt bits E(32554) CCDS2742.1 TDGF1 gene_id:6997|Hs108|chr3 ( 188) 1382 257.3 4.1e-69 CCDS54575.1 TDGF1 gene_id:6997|Hs108|chr3 ( 172) 1266 236.4 7e-63 CCDS2162.1 CFC1 gene_id:55997|Hs108|chr2 ( 223) 319 66.9 1e-11 CCDS33286.1 CFC1B gene_id:653275|Hs108|chr2 ( 223) 317 66.5 1.3e-11 >>CCDS2742.1 TDGF1 gene_id:6997|Hs108|chr3 (188 aa) initn: 1382 init1: 1382 opt: 1382 Z-score: 1354.3 bits: 257.3 E(32554): 4.1e-69 Smith-Waterman score: 1382; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188) 10 20 30 40 50 60 pF1KE1 MDCRKMARFSYSVIWIMAISKVFELGLVAGLGHQEFARPSRGYLAFRDDSIWPQEEPAIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 MDCRKMARFSYSVIWIMAISKVFELGLVAGLGHQEFARPSRGYLAFRDDSIWPQEEPAIR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 PRSSQRVPPMGIQHSKELNRTCCLNGGTCMLGSFCACPPSFYGRNCEHDVRKENCGSVPH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 PRSSQRVPPMGIQHSKELNRTCCLNGGTCMLGSFCACPPSFYGRNCEHDVRKENCGSVPH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 DTWLPKKCSLCKCWHGQLRCFPQAFLPGCDGLVMDEHLVASRTPELPPSARTTTFMLVGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 DTWLPKKCSLCKCWHGQLRCFPQAFLPGCDGLVMDEHLVASRTPELPPSARTTTFMLVGI 130 140 150 160 170 180 pF1KE1 CLSIQSYY :::::::: CCDS27 CLSIQSYY >>CCDS54575.1 TDGF1 gene_id:6997|Hs108|chr3 (172 aa) initn: 1266 init1: 1266 opt: 1266 Z-score: 1242.4 bits: 236.4 E(32554): 7e-63 Smith-Waterman score: 1266; 100.0% identity (100.0% similar) in 172 aa overlap (17-188:1-172) 10 20 30 40 50 60 pF1KE1 MDCRKMARFSYSVIWIMAISKVFELGLVAGLGHQEFARPSRGYLAFRDDSIWPQEEPAIR :::::::::::::::::::::::::::::::::::::::::::: CCDS54 MAISKVFELGLVAGLGHQEFARPSRGYLAFRDDSIWPQEEPAIR 10 20 30 40 70 80 90 100 110 120 pF1KE1 PRSSQRVPPMGIQHSKELNRTCCLNGGTCMLGSFCACPPSFYGRNCEHDVRKENCGSVPH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 PRSSQRVPPMGIQHSKELNRTCCLNGGTCMLGSFCACPPSFYGRNCEHDVRKENCGSVPH 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE1 DTWLPKKCSLCKCWHGQLRCFPQAFLPGCDGLVMDEHLVASRTPELPPSARTTTFMLVGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 DTWLPKKCSLCKCWHGQLRCFPQAFLPGCDGLVMDEHLVASRTPELPPSARTTTFMLVGI 110 120 130 140 150 160 pF1KE1 CLSIQSYY :::::::: CCDS54 CLSIQSYY 170 >>CCDS2162.1 CFC1 gene_id:55997|Hs108|chr2 (223 aa) initn: 336 init1: 316 opt: 319 Z-score: 323.9 bits: 66.9 E(32554): 1e-11 Smith-Waterman score: 319; 37.7% identity (58.5% similar) in 130 aa overlap (52-181:68-184) 30 40 50 60 70 80 pF1KE1 VFELGLVAGLGHQEFARPSRGYLAFRDDSIWPQEEPAIRPRSSQRVPPMGIQHSKELNRT : ::: : : :. : . . CCDS21 VTKVATQKHRQSPLNWTSSHFGEVTGSAEGWGPEEPL--PYS--RAFGEGASARPR---- 40 50 60 70 80 90 100 110 120 130 140 pF1KE1 CCLNGGTCMLGSFCACPPSFYGRNCEHDVRKENCGSVPHDTWLPKKCSLCKCWHGQLRCF :: :::::.:::::.:: : :: :::: :. .::.. : .: . : ::.: : :.:. CCDS21 CCRNGGTCVLGSFCVCPAHFTGRYCEHDQRRSECGALEHGAWTLRACHLCRCIFGALHCL 90 100 110 120 130 140 150 160 170 180 pF1KE1 PQAFLPGCDGLVMDEHLVASRTPELPPSARTTTFMLVGICLSIQSYY : :: . ..::.. . : .. . ...:. : CCDS21 PLQTPDRCD----PKDFLASHA-HGPSAGGAPSLLLLLPCALLHRLLRPDAPAHPRSLVP 150 160 170 180 190 200 CCDS21 SVLQRERRPCGRPGLGHRL 210 220 >>CCDS33286.1 CFC1B gene_id:653275|Hs108|chr2 (223 aa) initn: 336 init1: 316 opt: 317 Z-score: 322.0 bits: 66.5 E(32554): 1.3e-11 Smith-Waterman score: 317; 41.0% identity (65.0% similar) in 100 aa overlap (82-181:90-184) 60 70 80 90 100 110 pF1KE1 WPQEEPAIRPRSSQRVPPMGIQHSKELNRTCCLNGGTCMLGSFCACPPSFYGRNCEHDVR :: :::::.:::::.:: : :: :::: : CCDS33 EVTGSAEGWGPEEPLPYSWAFGEGASARPRCCRNGGTCVLGSFCVCPAHFTGRYCEHDQR 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 KENCGSVPHDTWLPKKCSLCKCWHGQLRCFPQAFLPGCDGLVMDEHLVASRTPELPPSAR . .::.. : .: . : ::.: : :.:.: :: . ..::.. . : .. CCDS33 RSECGALEHGAWTLRACHLCRCIFGALHCLPLQTPDRCD----PKDFLASHA-HGPSAGG 120 130 140 150 160 170 180 pF1KE1 TTTFMLVGICLSIQSYY . ...:. : CCDS33 APSLLLLLPCALLHRLLRPDAPAHPRSLVPSVLQRERRPCGRPGLGHRL 180 190 200 210 220 188 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 17:50:40 2016 done: Sun Nov 6 17:50:41 2016 Total Scan time: 2.070 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]