FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1699, 232 aa 1>>>pF1KE1699 232 - 232 aa - 232 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2760+/-0.0003; mu= 14.6401+/- 0.019 mean_var=65.2662+/-13.350, 0's: 0 Z-trim(118.3): 6 B-trim: 1369 in 1/53 Lambda= 0.158756 statistics sampled from 31012 (31018) to 31012 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.732), E-opt: 0.2 (0.364), width: 16 Scan time: 6.410 The best scores are: opt bits E(85289) NP_113628 (OMIM: 607181) receptor-transporting pro ( 232) 1653 386.7 1.8e-107 NP_071430 (OMIM: 609350) receptor-transporting pro ( 246) 578 140.5 2.5e-33 XP_016861790 (OMIM: 609138) PREDICTED: receptor-tr ( 225) 380 95.1 1e-19 NP_001004312 (OMIM: 609138) receptor-transporting ( 225) 380 95.1 1e-19 XP_016861791 (OMIM: 609138) PREDICTED: receptor-tr ( 225) 380 95.1 1e-19 NP_714919 (OMIM: 609137) receptor-transporting pro ( 263) 357 89.9 4.6e-18 >>NP_113628 (OMIM: 607181) receptor-transporting protein (232 aa) initn: 1653 init1: 1653 opt: 1653 Z-score: 2050.3 bits: 386.7 E(85289): 1.8e-107 Smith-Waterman score: 1653; 100.0% identity (100.0% similar) in 232 aa overlap (1-232:1-232) 10 20 30 40 50 60 pF1KE1 MAGDTEVWKQMFQELMREVKPWHRWTLRPDKGLLPNVLKPGWMQYQQWTFARFQCSSCSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_113 MAGDTEVWKQMFQELMREVKPWHRWTLRPDKGLLPNVLKPGWMQYQQWTFARFQCSSCSR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 NWASAQVLVLFHMNWSEEKSRGQVKMRVFTQRCKKCPQPLFEDPEFTQENISRILKNLVF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_113 NWASAQVLVLFHMNWSEEKSRGQVKMRVFTQRCKKCPQPLFEDPEFTQENISRILKNLVF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 RILKKCYRGRFQLIEEVPMIKDISLEGPHNSDNCEACLQGFCAGPIQVTSLPPSQTPRVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_113 RILKKCYRGRFQLIEEVPMIKDISLEGPHNSDNCEACLQGFCAGPIQVTSLPPSQTPRVH 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 SIYKVEEVVKPWASGENVYSYACQNHICRNLSIFCCCVILIVIVVIVVKTAI :::::::::::::::::::::::::::::::::::::::::::::::::::: NP_113 SIYKVEEVVKPWASGENVYSYACQNHICRNLSIFCCCVILIVIVVIVVKTAI 190 200 210 220 230 >>NP_071430 (OMIM: 609350) receptor-transporting protein (246 aa) initn: 603 init1: 550 opt: 578 Z-score: 719.3 bits: 140.5 E(85289): 2.5e-33 Smith-Waterman score: 590; 39.0% identity (66.0% similar) in 241 aa overlap (1-229:1-241) 10 20 30 40 50 60 pF1KE1 MAGDTEVWKQMFQELMREVKPWHRWTLRPDKGLLPNVLKPGWMQYQQWTFARFQCSSCSR :. : .:.: ::::..:.:: :::. : .: . : :: :::: .:. :.::::.: NP_071 MVVDFWTWEQTFQELIQEAKPRATWTLKLDGNLQLDCLAQGWKQYQQRAFGWFRCSSCQR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 NWASAQVLVLFHMNWSEEKSRGQVKMRVFTQRCKKCPQPLFEDPEFTQENISRILKNLVF .:::::: .: : : . :.:::.::.: :::.:: .: :::.... :::.::: NP_071 SWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWSQYEMPEFSSDSTMRILSNLVQ 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 RILKKCYRGRFQLIEEVPMIKDISLEGPHNSDNCEACLQGFCAGPIQVTSLPPSQT---- .:::: : . . :.:.: ..:::: :.. ::::: :.:. .. ::.. NP_071 HILKKYYGNGTRKSPEMPVILEVSLEGSHDTANCEACTLGICGQGLKSCMTKPSKSLLPH 130 140 150 160 170 180 180 190 200 210 220 pF1KE1 -------PRVHSIYKVEEVVKPWASGENVYSYACQN-HICRNLSIFCCCVILIVIVVIVV : . ..: .... . : .... . . .. :. . . ::.....: ::: NP_071 LKTGNSSPGIGAVYLANQAKNQSAEAKEAKGSGYEKLGPSRDPDPLNICVFILLLVFIVV 190 200 210 220 230 240 230 pF1KE1 KTAI : NP_071 KCFTSE >>XP_016861790 (OMIM: 609138) PREDICTED: receptor-transp (225 aa) initn: 387 init1: 216 opt: 380 Z-score: 474.8 bits: 95.1 E(85289): 1e-19 Smith-Waterman score: 380; 37.6% identity (63.7% similar) in 157 aa overlap (8-160:10-161) 10 20 30 40 50 pF1KE1 MAGDTEVWKQMFQELMREVKPWHRWTLRPDKGLLPNVLKPGWMQY-QQWTFARFQCSS ::..: : :. .:: : : : .: :. : ::: :: .: . .::.:: XP_016 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 CSRNWASAQVLVLFHMNWSEEKSRGQVKMRVFTQRCKKCPQPLFEDPEFTQENISRILKN : ..: ::.:..:::: .. . :.:.:::: : : .: ... . .::: .. : XP_016 CWHTWQSAHVVILFHMFLDRAQRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 LVFRILKKCYR---GRFQLIEEVPMIKDISLEGPHNSDNCEACLQGFCAGPIQVTSLPPS :. . ..::. :.... .: : ::: .. :::: .: XP_016 LITSLREQCYEEDGGQYRI--HVASRPD---SGPHRAEFCEACQEGIVHWKPSEKLLEEE 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 QTPRVHSIYKVEEVVKPWASGENVYSYACQNHICRNLSIFCCCVILIVIVVIVVKTAI XP_016 VTTYTSEASKPRAQAGSGYNFLSLRWCLFWASLCLLVVYLQFSFLSPAFF 180 190 200 210 220 >>NP_001004312 (OMIM: 609138) receptor-transporting prot (225 aa) initn: 387 init1: 216 opt: 380 Z-score: 474.8 bits: 95.1 E(85289): 1e-19 Smith-Waterman score: 380; 37.6% identity (63.7% similar) in 157 aa overlap (8-160:10-161) 10 20 30 40 50 pF1KE1 MAGDTEVWKQMFQELMREVKPWHRWTLRPDKGLLPNVLKPGWMQY-QQWTFARFQCSS ::..: : :. .:: : : : .: :. : ::: :: .: . .::.:: NP_001 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 CSRNWASAQVLVLFHMNWSEEKSRGQVKMRVFTQRCKKCPQPLFEDPEFTQENISRILKN : ..: ::.:..:::: .. . :.:.:::: : : .: ... . .::: .. : NP_001 CWHTWQSAHVVILFHMFLDRAQRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 LVFRILKKCYR---GRFQLIEEVPMIKDISLEGPHNSDNCEACLQGFCAGPIQVTSLPPS :. . ..::. :.... .: : ::: .. :::: .: NP_001 LITSLREQCYEEDGGQYRI--HVASRPD---SGPHRAEFCEACQEGIVHWKPSEKLLEEE 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 QTPRVHSIYKVEEVVKPWASGENVYSYACQNHICRNLSIFCCCVILIVIVVIVVKTAI NP_001 VTTYTSEASKPRAQAGSGYNFLSLRWCLFWASLCLLVVYLQFSFLSPAFF 180 190 200 210 220 >>XP_016861791 (OMIM: 609138) PREDICTED: receptor-transp (225 aa) initn: 387 init1: 216 opt: 380 Z-score: 474.8 bits: 95.1 E(85289): 1e-19 Smith-Waterman score: 380; 37.6% identity (63.7% similar) in 157 aa overlap (8-160:10-161) 10 20 30 40 50 pF1KE1 MAGDTEVWKQMFQELMREVKPWHRWTLRPDKGLLPNVLKPGWMQY-QQWTFARFQCSS ::..: : :. .:: : : : .: :. : ::: :: .: . .::.:: XP_016 MCTSLTTCEWKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSW 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE1 CSRNWASAQVLVLFHMNWSEEKSRGQVKMRVFTQRCKKCPQPLFEDPEFTQENISRILKN : ..: ::.:..:::: .. . :.:.:::: : : .: ... . .::: .. : XP_016 CWHTWQSAHVVILFHMFLDRAQRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDN 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 LVFRILKKCYR---GRFQLIEEVPMIKDISLEGPHNSDNCEACLQGFCAGPIQVTSLPPS :. . ..::. :.... .: : ::: .. :::: .: XP_016 LITSLREQCYEEDGGQYRI--HVASRPD---SGPHRAEFCEACQEGIVHWKPSEKLLEEE 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 QTPRVHSIYKVEEVVKPWASGENVYSYACQNHICRNLSIFCCCVILIVIVVIVVKTAI XP_016 VTTYTSEASKPRAQAGSGYNFLSLRWCLFWASLCLLVVYLQFSFLSPAFF 180 190 200 210 220 >>NP_714919 (OMIM: 609137) receptor-transporting protein (263 aa) initn: 369 init1: 208 opt: 357 Z-score: 445.3 bits: 89.9 E(85289): 4.6e-18 Smith-Waterman score: 357; 37.7% identity (61.6% similar) in 159 aa overlap (5-160:43-197) 10 20 30 pF1KE1 MAGDTEVWKQMFQELMREVKPWHRWTLRPDKGLL :. ::..: : :.:.:: : : : .: NP_714 ALHLPSLSVFSLRWKLPSLTTDETMCKSVTTDEWKKVFYEKMEEAKPADSWDLIIDPNLK 20 30 40 50 60 70 40 50 60 70 80 90 pF1KE1 PNVLKPGWMQYQQW-TFARFQCSSCSRNWASAQVLVLFHMNWSEEKSRGQVKMRVFTQRC :::.::: :: . . .::.:: : ..: : :..:::: .. . :.:.:::: : : NP_714 HNVLSPGWKQYLELHASGRFHCSWCWHTWQSPYVVILFHMFLDRAQRAGSVRMRVFKQLC 80 90 100 110 120 130 100 110 120 130 140 150 pF1KE1 KKCPQPLFEDPEFTQENISRILKNLVFRILKKCY--RGRFQLIEEVPMIKDISLEGPHNS .: ... . .::: .. ::. . ..:: :: : .: .: . : . NP_714 YECGTARLDESSMLEENIEGLVDNLITSLREQCYGERGG-QYRIHVASRQD---NRRHRG 140 150 160 170 180 160 170 180 190 200 210 pF1KE1 DNCEACLQGFCAGPIQVTSLPPSQTPRVHSIYKVEEVVKPWASGENVYSYACQNHICRNL . :::: .: NP_714 EFCEACQEGIVHWKPSEKLLEEEATTYTFSRAPSPTKSQDQTGSGWNFCSIPWCLFWATV 190 200 210 220 230 240 232 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 17:51:25 2016 done: Sun Nov 6 17:51:25 2016 Total Scan time: 6.410 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]