FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6789, 580 aa 1>>>pF1KE6789 580 - 580 aa - 580 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4474+/-0.000977; mu= 17.4025+/- 0.059 mean_var=60.1776+/-11.886, 0's: 0 Z-trim(103.8): 20 B-trim: 36 in 1/48 Lambda= 0.165332 statistics sampled from 7593 (7597) to 7593 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.603), E-opt: 0.2 (0.233), width: 16 Scan time: 2.550 The best scores are: opt bits E(32554) CCDS2709.1 POMGNT2 gene_id:84892|Hs108|chr3 ( 580) 3930 946.3 0 CCDS63684.1 EOGT gene_id:285203|Hs108|chr3 ( 527) 259 70.6 5.4e-12 >>CCDS2709.1 POMGNT2 gene_id:84892|Hs108|chr3 (580 aa) initn: 3930 init1: 3930 opt: 3930 Z-score: 5060.3 bits: 946.3 E(32554): 0 Smith-Waterman score: 3930; 100.0% identity (100.0% similar) in 580 aa overlap (1-580:1-580) 10 20 30 40 50 60 pF1KE6 MHLSAVFNALLVSVLAAVLWKHVRLREHAATLEEELALSRQATEPAPALRIDYPKALQIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 MHLSAVFNALLVSVLAAVLWKHVRLREHAATLEEELALSRQATEPAPALRIDYPKALQIL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 MEGGTHMVCTGRTHTDRICRFKWLCYSNEAEEFIFFHGNTSVMLPNLGSRRFQPALLDLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 MEGGTHMVCTGRTHTDRICRFKWLCYSNEAEEFIFFHGNTSVMLPNLGSRRFQPALLDLS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 TVEDHNTQYFNFVELPAAALRFMPKPVFVPDVALIANRFNPDNLMHVFHDDLLPLFYTLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 TVEDHNTQYFNFVELPAAALRFMPKPVFVPDVALIANRFNPDNLMHVFHDDLLPLFYTLR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 QFPGLAHEARLFFMEGWGEGAHFDLYKLLSPKQPLLRAQLKTLGRLLCFSHAFVGLSKIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 QFPGLAHEARLFFMEGWGEGAHFDLYKLLSPKQPLLRAQLKTLGRLLCFSHAFVGLSKIT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 TWYQYGFVQPQGPKANILVSGNEIRQFARFMTEKLNVSHTGVPLGEEYILVFSRTQNRLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 TWYQYGFVQPQGPKANILVSGNEIRQFARFMTEKLNVSHTGVPLGEEYILVFSRTQNRLI 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE6 LNEAELLLALAQEFQMKTVTVSLEDHTFADVVRLVSNASMLVSMHGAQLVTTLFLPRGAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 LNEAELLLALAQEFQMKTVTVSLEDHTFADVVRLVSNASMLVSMHGAQLVTTLFLPRGAT 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE6 VVELFPYAVNPDHYTPYKTLAMLPGMDLQYVAWRNMMPENTVTHPERPWDQGGITHLDRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 VVELFPYAVNPDHYTPYKTLAMLPGMDLQYVAWRNMMPENTVTHPERPWDQGGITHLDRA 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE6 EQARILQSREVPRHLCCRNPEWLFRIYQDTKVDIPSLIQTIRRVVKGRPGPRKQKWTVGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 EQARILQSREVPRHLCCRNPEWLFRIYQDTKVDIPSLIQTIRRVVKGRPGPRKQKWTVGL 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE6 YPGKVREARCQASVHGASEARLTVSWQIPWNLKYLKVREVKYEVWLQEQGENTYVPYILA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS27 YPGKVREARCQASVHGASEARLTVSWQIPWNLKYLKVREVKYEVWLQEQGENTYVPYILA 490 500 510 520 530 540 550 560 570 580 pF1KE6 LQNHTFTENIKPFTTYLVWVRCIFNKILLGPFADVLVCNT :::::::::::::::::::::::::::::::::::::::: CCDS27 LQNHTFTENIKPFTTYLVWVRCIFNKILLGPFADVLVCNT 550 560 570 580 >>CCDS63684.1 EOGT gene_id:285203|Hs108|chr3 (527 aa) initn: 133 init1: 77 opt: 259 Z-score: 328.8 bits: 70.6 E(32554): 5.4e-12 Smith-Waterman score: 259; 26.9% identity (57.7% similar) in 305 aa overlap (163-449:245-525) 140 150 160 170 180 190 pF1KE6 VELPAAALRFMPKPVFVPDVALIANRFNPDNLMHVFHDDLLPLFYTLRQFPGLAHEARLF :..: : : .. :. : . ... .. . CCDS63 TQLNFRPIEDAKCDIVIEKPTYFMKLDAGVNMYHHFCD-FINLYITQHVNNSFSTDVYIV 220 230 240 250 260 270 200 210 220 230 240 pF1KE6 FME--GWGEGAHF-DLYKLLSPKQPLLRAQLKTL-GRLLCFSHAFVGLSKITTWYQYGFV . . ..: : : : .. .. . . .::: .. .::..: .: ..::. CCDS63 MWDTSSYGYGDLFSDTWNAFTDYDVI---HLKTYDSKRVCFKEAVFSL---LPRMRYGLF 280 290 300 310 320 250 260 270 280 290 300 pF1KE6 QPQGPKANILVSGNE----IRQFARFMTEKLNVSHTGVPLGEEYILVFSR-TQNRLILNE . : :.:: . .: ::. . ..::... : :. . ...: :. : :::. CCDS63 Y-NTP----LISGCQNTGLFRAFAQHVLHRLNITQEGPKDGKIRVTILARSTEYRKILNQ 330 340 350 360 370 380 310 320 330 340 350 360 pF1KE6 AELLLAL--AQEFQMKTVTVSLEDHTFADVVRLVSNASMLVSMHGAQLVTTLFLPRGATV ::. :: .. :... : . .. : : .:.. :......:::: :. :::: :.: CCDS63 NELVNALKTVSTFEVQIVDYKYRELGFLDQLRITHNTDIFIGMHGAGLTHLLFLPDWAAV 390 400 410 420 430 440 370 380 390 400 410 pF1KE6 VELFPYAVNPDHYTPYKTLAMLPGMDLQYVAWR---NMMPENTVTHP---ERPWDQGGIT ::. : . : :: : :. .:..:: ...:.. :: :.: . CCDS63 FELY----NCEDERCYLDLARLRGV--HYITWRRQNKVFPQDKGHHPTLGEHP--KFTNY 450 460 470 480 490 420 430 440 450 460 470 pF1KE6 HLDRAE-QARILQSREVPRHLCCRNPEWLFRIYQDTKVDIPSLIQTIRRVVKGRPGPRKQ .: : . .::. . :. ..:.: :. .: CCDS63 SFDVEEFMYLVLQAAD---HVL-QHPKWPFKKKHDEL 500 510 520 480 490 500 510 520 530 pF1KE6 KWTVGLYPGKVREARCQASVHGASEARLTVSWQIPWNLKYLKVREVKYEVWLQEQGENTY 580 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 16:22:03 2016 done: Tue Nov 8 16:22:03 2016 Total Scan time: 2.550 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]