FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5155, 113 aa
  1>>>pF1KE5155 113 - 113 aa - 113 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2686+/-0.000678; mu= 9.4507+/- 0.041
 mean_var=51.8275+/-10.347, 0's: 0 Z-trim(107.9): 12  B-trim: 0 in 0/52
 Lambda= 0.178153
 statistics sampled from 9840 (9843) to 9840 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.302), width:  16
 Scan time:  0.850

The best scores are:                                      opt bits E(32554)
CCDS2690.1 EIF1B gene_id:10289|Hs108|chr3          ( 113)  749 199.9 2.8e-52
CCDS11403.1 EIF1 gene_id:10209|Hs108|chr17         ( 113)  714 190.9 1.4e-49


>>CCDS2690.1 EIF1B gene_id:10289|Hs108|chr3               (113 aa)
 initn: 749 init1: 749 opt: 749  Z-score: 1052.0  bits: 199.9 E(32554): 2.8e-52
Smith-Waterman score: 749; 100.0% identity (100.0% similar) in 113 aa overlap (1-113:1-113)

               10        20        30        40        50        60
pF1KE5 MSTIQNLQSFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 MSTIQNLQSFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLV
               10        20        30        40        50        60

               70        80        90       100       110   
pF1KE5 KAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 KAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF
               70        80        90       100       110   

>>CCDS11403.1 EIF1 gene_id:10209|Hs108|chr17              (113 aa)
 initn: 714 init1: 714 opt: 714  Z-score: 1003.4  bits: 190.9 E(32554): 1.4e-49
Smith-Waterman score: 714; 92.0% identity (100.0% similar) in 113 aa overlap (1-113:1-113)

               10        20        30        40        50        60
pF1KE5 MSTIQNLQSFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLV
       ::.::::.::::::::.:::::::::::::::::::::::::::::::::::::::::::
CCDS11 MSAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLV
               10        20        30        40        50        60

               70        80        90       100       110   
pF1KE5 KAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF
       :::::::::::::::::::::::::::::::::::::.:.:..:..:::::::
CCDS11 KAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF
               70        80        90       100       110   




113 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:02:29 2016 done: Mon Nov  7 22:02:30 2016
 Total Scan time:  0.850 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]