FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3043, 183 aa 1>>>pF1KE3043 183 - 183 aa - 183 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.3219+/-0.000299; mu= 18.1853+/- 0.019 mean_var=55.2649+/-11.243, 0's: 0 Z-trim(116.7): 25 B-trim: 0 in 0/51 Lambda= 0.172524 statistics sampled from 28138 (28162) to 28138 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.716), E-opt: 0.2 (0.33), width: 16 Scan time: 5.160 The best scores are: opt bits E(85289) NP_060271 (OMIM: 607889) CKLF-like MARVEL transmem ( 183) 1185 302.3 2.9e-82 NP_852662 (OMIM: 607887) CKLF-like MARVEL transmem ( 208) 329 89.3 4.4e-18 XP_016878443 (OMIM: 607887) PREDICTED: CKLF-like M ( 221) 329 89.3 4.6e-18 NP_848933 (OMIM: 607887) CKLF-like MARVEL transmem ( 234) 329 89.3 4.8e-18 XP_011521184 (OMIM: 607887) PREDICTED: CKLF-like M ( 179) 301 82.2 4.9e-16 NP_612419 (OMIM: 607890) CKLF-like MARVEL transmem ( 175) 146 43.7 0.0002 NP_853531 (OMIM: 607886) CKLF-like MARVEL transmem ( 182) 140 42.2 0.00057 NP_653202 (OMIM: 607886) CKLF-like MARVEL transmem ( 182) 140 42.2 0.00057 XP_006721194 (OMIM: 607886) PREDICTED: CKLF-like M ( 182) 140 42.2 0.00057 >>NP_060271 (OMIM: 607889) CKLF-like MARVEL transmembran (183 aa) initn: 1185 init1: 1185 opt: 1185 Z-score: 1597.9 bits: 302.3 E(85289): 2.9e-82 Smith-Waterman score: 1185; 100.0% identity (100.0% similar) in 183 aa overlap (1-183:1-183) 10 20 30 40 50 60 pF1KE3 MENGAVYSPTTEEDPGPARGPRSGLAAYFFMGRLPLLRRVLKGLQLLLSLLAFICEEVVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 MENGAVYSPTTEEDPGPARGPRSGLAAYFFMGRLPLLRRVLKGLQLLLSLLAFICEEVVS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 QCTLCGGLYFFEFVSCSAFLLSLLILIVYCTPFYERVDTTKVKSSDFYITLGTGCVFLLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 QCTLCGGLYFFEFVSCSAFLLSLLILIVYCTPFYERVDTTKVKSSDFYITLGTGCVFLLA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 SIIFVSTHDRTSAEIAAIVFGFIASFMFLLDFITMLYEKRQESQLRKPENTTRAEALTEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 SIIFVSTHDRTSAEIAAIVFGFIASFMFLLDFITMLYEKRQESQLRKPENTTRAEALTEP 130 140 150 160 170 180 pF1KE3 LNA ::: NP_060 LNA >>NP_852662 (OMIM: 607887) CKLF-like MARVEL transmembran (208 aa) initn: 330 init1: 310 opt: 329 Z-score: 445.7 bits: 89.3 E(85289): 4.4e-18 Smith-Waterman score: 329; 35.9% identity (65.7% similar) in 181 aa overlap (1-179:19-193) 10 20 30 40 pF1KE3 MENGAV--YSPTTEEDPGPARGPRSGLAAYFFMGRLPLLRRV : .:: :.:::: : : .:: . : : : NP_852 MRSGEELDGFEGEASSTSMISGASSPYQPTTE--PVSQRRGLAGLRCDPDYLRGALGR-- 10 20 30 40 50 50 60 70 80 90 100 pF1KE3 LKGLQLLLSLLAFICEEVVSQCTLCGGLYFFEFVSCSAFLLSLLILIVYCTPFYERVDTT :: :..:.:.:::: :.. :. : :::::::::::::... ..::.. .. :. NP_852 LKVAQVILALIAFICIETIMACSPCEGLYFFEFVSCSAFVVTGVLLIMFSLNLHMRIPQI 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE3 KVKSSDFYITLGTGCVFLLASIIFVSTHDRTSAEIAAIVFGFIASFMFLLDFITMLYEKR . . .:. : .. .:..:::.... . :..:::::..:::.:. . .. :.: .. NP_852 NWNLTDLVNTGLSAFLFFIASIVLAALNHRAGAEIAAVIFGFLATAAYAVN--TFLAVQK 120 130 140 150 160 170 170 180 pF1KE3 QESQLRKPENTTRAEALTEPLNA . ..:. .. .: :: NP_852 WRVSVRQQSTNDYIRARTESRDVDSRPEIQRLDT 180 190 200 >>XP_016878443 (OMIM: 607887) PREDICTED: CKLF-like MARVE (221 aa) initn: 330 init1: 310 opt: 329 Z-score: 445.4 bits: 89.3 E(85289): 4.6e-18 Smith-Waterman score: 329; 35.9% identity (65.7% similar) in 181 aa overlap (1-179:19-193) 10 20 30 40 pF1KE3 MENGAV--YSPTTEEDPGPARGPRSGLAAYFFMGRLPLLRRV : .:: :.:::: : : .:: . : : : XP_016 MRSGEELDGFEGEASSTSMISGASSPYQPTTE--PVSQRRGLAGLRCDPDYLRGALGR-- 10 20 30 40 50 50 60 70 80 90 100 pF1KE3 LKGLQLLLSLLAFICEEVVSQCTLCGGLYFFEFVSCSAFLLSLLILIVYCTPFYERVDTT :: :..:.:.:::: :.. :. : :::::::::::::... ..::.. .. :. XP_016 LKVAQVILALIAFICIETIMACSPCEGLYFFEFVSCSAFVVTGVLLIMFSLNLHMRIPQI 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE3 KVKSSDFYITLGTGCVFLLASIIFVSTHDRTSAEIAAIVFGFIASFMFLLDFITMLYEKR . . .:. : .. .:..:::.... . :..:::::..:::.:. . .. :.: .. XP_016 NWNLTDLVNTGLSAFLFFIASIVLAALNHRAGAEIAAVIFGFLATAAYAVN--TFLAVQK 120 130 140 150 160 170 170 180 pF1KE3 QESQLRKPENTTRAEALTEPLNA . ..:. .. .: :: XP_016 WRVSVRQQSTNDYIRARTESRDVDSRPEIQRLDTLNWKPNGHQQVKG 180 190 200 210 220 >>NP_848933 (OMIM: 607887) CKLF-like MARVEL transmembran (234 aa) initn: 330 init1: 310 opt: 329 Z-score: 445.0 bits: 89.3 E(85289): 4.8e-18 Smith-Waterman score: 329; 35.9% identity (65.7% similar) in 181 aa overlap (1-179:19-193) 10 20 30 40 pF1KE3 MENGAV--YSPTTEEDPGPARGPRSGLAAYFFMGRLPLLRRV : .:: :.:::: : : .:: . : : : NP_848 MRSGEELDGFEGEASSTSMISGASSPYQPTTE--PVSQRRGLAGLRCDPDYLRGALGR-- 10 20 30 40 50 50 60 70 80 90 100 pF1KE3 LKGLQLLLSLLAFICEEVVSQCTLCGGLYFFEFVSCSAFLLSLLILIVYCTPFYERVDTT :: :..:.:.:::: :.. :. : :::::::::::::... ..::.. .. :. NP_848 LKVAQVILALIAFICIETIMACSPCEGLYFFEFVSCSAFVVTGVLLIMFSLNLHMRIPQI 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE3 KVKSSDFYITLGTGCVFLLASIIFVSTHDRTSAEIAAIVFGFIASFMFLLDFITMLYEKR . . .:. : .. .:..:::.... . :..:::::..:::.:. . .. :.: .. NP_848 NWNLTDLVNTGLSAFLFFIASIVLAALNHRAGAEIAAVIFGFLATAAYAVN--TFLAVQK 120 130 140 150 160 170 170 180 pF1KE3 QESQLRKPENTTRAEALTEPLNA . ..:. .. .: :: NP_848 WRVSVRQQSTNDYIRARTESRDVDSRPEIQRLDTFSYSTNVTVRKKSPTNLLSLNHWQLA 180 190 200 210 220 230 >>XP_011521184 (OMIM: 607887) PREDICTED: CKLF-like MARVE (179 aa) initn: 302 init1: 282 opt: 301 Z-score: 408.9 bits: 82.2 E(85289): 4.9e-16 Smith-Waterman score: 301; 35.3% identity (72.2% similar) in 133 aa overlap (47-179:34-164) 20 30 40 50 60 70 pF1KE3 PARGPRSGLAAYFFMGRLPLLRRVLKGLQLLLSLLAFICEEVVSQCTLCGGLYFFEFVSC .:.:.:::: :.. :. : :::::::::: XP_011 GEELDGFEGEASSTSMISGASSPYQPTTEPILALIAFICIETIMACSPCEGLYFFEFVSC 10 20 30 40 50 60 80 90 100 110 120 130 pF1KE3 SAFLLSLLILIVYCTPFYERVDTTKVKSSDFYITLGTGCVFLLASIIFVSTHDRTSAEIA :::... ..::.. .. :. . . .:. : .. .:..:::.... . :..:::: XP_011 SAFVVTGVLLIMFSLNLHMRIPQINWNLTDLVNTGLSAFLFFIASIVLAALNHRAGAEIA 70 80 90 100 110 120 140 150 160 170 180 pF1KE3 AIVFGFIASFMFLLDFITMLYEKRQESQLRKPENTTRAEALTEPLNA :..:::.:. . .. :.: .. . ..:. .. .: :: XP_011 AVIFGFLATAAYAVN--TFLAVQKWRVSVRQQSTNDYIRARTESRDVDSRPEIQRLDT 130 140 150 160 170 >>NP_612419 (OMIM: 607890) CKLF-like MARVEL transmembran (175 aa) initn: 173 init1: 108 opt: 146 Z-score: 200.5 bits: 43.7 E(85289): 0.0002 Smith-Waterman score: 146; 30.2% identity (54.1% similar) in 159 aa overlap (1-149:1-155) 10 20 30 40 50 pF1KE3 MENGAVYSPTTEEDPGPARGPRSGLA---AYFFMGRLPLLR-----RVLKGLQLLLSLLA : .:: :: . : : :: .: : : . : : : .:: :.. :.: NP_612 MSHGAGLVRTTC-SSGSALGPGAGAAQPSASPLEGLLDLSYPRTHAALLKVAQMVTLLIA 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 FICEEVVSQCTLCGGLY-FFEFVSCSAFLLSLLILIVYCTPFYERVDTTKVKSSDF-YIT ::: : :. . : .:: :. ... : . .:. ::. . . :.. . NP_612 FIC--VRSSLWTNYSAYSYFEVVTICDLIMILAFYLVHLFRFYRVLTCISWPLSELLHYL 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 LGTGCVFLLASIIFVSTHDRTSAEIAAIVFGFIASFMFLLDFITMLYEKRQESQLRKPEN .:: ..:.:::. .: :. .:. .:::.:.:. . NP_612 IGT-LLLLIASIVAASKSYNQSGLVAGAIFGFMATFLCMASIWLSYKISCVTQSTDAAV 120 130 140 150 160 170 180 pF1KE3 TTRAEALTEPLNA >>NP_853531 (OMIM: 607886) CKLF-like MARVEL transmembran (182 aa) initn: 138 init1: 65 opt: 140 Z-score: 192.2 bits: 42.2 E(85289): 0.00057 Smith-Waterman score: 140; 28.6% identity (52.6% similar) in 154 aa overlap (9-156:6-151) 10 20 30 40 50 pF1KE3 MENGAVYSPTTEEDPGPARGPRSGLAAYFFMGRLPLLRRV--LKGLQLL----LSLLAFI : . :: :: : : : :. . . :: . ::: :: ::...:: NP_853 MWPPDPDPDPDPEPAGGSRPGPAVPGLRALLPARAFLCSLKGRLLLAESGLSFITFI 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 CEEVVSQCTLCGGLYFFEFVSCSAFLLSLLILIVYCTPFYERVDTTKVKSSDFYITLGTG : :.:. . : . :::.: .:.. . .. . :: . .. NP_853 CY-VASSASA------FLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAA 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 CVFLLASIIFVSTHDRTSAEIAAIVFGFIASFMFLLDFITMLYEKRQESQLRKPENTTRA ... :: .. .. .: :: ::::.:...: :: .. NP_853 LIYFAISITAIAKYS-DGASKAAGVFGFFATIVFATDFYLIFNDVAKFLKQGDSADETTA 120 130 140 150 160 180 pF1KE3 EALTEPLNA NP_853 HKTEEENSDSDSD 170 180 >>NP_653202 (OMIM: 607886) CKLF-like MARVEL transmembran (182 aa) initn: 138 init1: 65 opt: 140 Z-score: 192.2 bits: 42.2 E(85289): 0.00057 Smith-Waterman score: 140; 28.6% identity (52.6% similar) in 154 aa overlap (9-156:6-151) 10 20 30 40 50 pF1KE3 MENGAVYSPTTEEDPGPARGPRSGLAAYFFMGRLPLLRRV--LKGLQLL----LSLLAFI : . :: :: : : : :. . . :: . ::: :: ::...:: NP_653 MWPPDPDPDPDPEPAGGSRPGPAVPGLRALLPARAFLCSLKGRLLLAESGLSFITFI 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 CEEVVSQCTLCGGLYFFEFVSCSAFLLSLLILIVYCTPFYERVDTTKVKSSDFYITLGTG : :.:. . : . :::.: .:.. . .. . :: . .. NP_653 CY-VASSASA------FLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAA 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 CVFLLASIIFVSTHDRTSAEIAAIVFGFIASFMFLLDFITMLYEKRQESQLRKPENTTRA ... :: .. .. .: :: ::::.:...: :: .. NP_653 LIYFAISITAIAKYS-DGASKAAGVFGFFATIVFATDFYLIFNDVAKFLKQGDSADETTA 120 130 140 150 160 180 pF1KE3 EALTEPLNA NP_653 HKTEEENSDSDSD 170 180 >>XP_006721194 (OMIM: 607886) PREDICTED: CKLF-like MARVE (182 aa) initn: 138 init1: 65 opt: 140 Z-score: 192.2 bits: 42.2 E(85289): 0.00057 Smith-Waterman score: 140; 28.6% identity (52.6% similar) in 154 aa overlap (9-156:6-151) 10 20 30 40 50 pF1KE3 MENGAVYSPTTEEDPGPARGPRSGLAAYFFMGRLPLLRRV--LKGLQLL----LSLLAFI : . :: :: : : : :. . . :: . ::: :: ::...:: XP_006 MWPPDPDPDPDPEPAGGSRPGPAVPGLRALLPARAFLCSLKGRLLLAESGLSFITFI 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 CEEVVSQCTLCGGLYFFEFVSCSAFLLSLLILIVYCTPFYERVDTTKVKSSDFYITLGTG : :.:. . : . :::.: .:.. . .. . :: . .. XP_006 CY-VASSASA------FLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAA 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 CVFLLASIIFVSTHDRTSAEIAAIVFGFIASFMFLLDFITMLYEKRQESQLRKPENTTRA ... :: .. .. .: :: ::::.:...: :: .. XP_006 LIYFAISITAIAKYS-DGASKAAGVFGFFATIVFATDFYLIFNDVAKFLKQGDSADETTA 120 130 140 150 160 180 pF1KE3 EALTEPLNA XP_006 HKTEEENSDSDSD 170 180 183 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 17:52:30 2016 done: Sun Nov 6 17:52:31 2016 Total Scan time: 5.160 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]