FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3043, 183 aa 1>>>pF1KE3043 183 - 183 aa - 183 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.3738+/-0.000623; mu= 18.0175+/- 0.038 mean_var=56.6339+/-11.939, 0's: 0 Z-trim(110.6): 18 B-trim: 669 in 1/50 Lambda= 0.170426 statistics sampled from 11695 (11710) to 11695 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.741), E-opt: 0.2 (0.36), width: 16 Scan time: 1.850 The best scores are: opt bits E(32554) CCDS2653.1 CMTM6 gene_id:54918|Hs108|chr3 ( 183) 1185 298.7 1.3e-81 CCDS42170.1 CMTM4 gene_id:146223|Hs108|chr16 ( 208) 329 88.2 3.4e-18 CCDS10817.1 CMTM4 gene_id:146223|Hs108|chr16 ( 234) 329 88.3 3.7e-18 >>CCDS2653.1 CMTM6 gene_id:54918|Hs108|chr3 (183 aa) initn: 1185 init1: 1185 opt: 1185 Z-score: 1578.4 bits: 298.7 E(32554): 1.3e-81 Smith-Waterman score: 1185; 100.0% identity (100.0% similar) in 183 aa overlap (1-183:1-183) 10 20 30 40 50 60 pF1KE3 MENGAVYSPTTEEDPGPARGPRSGLAAYFFMGRLPLLRRVLKGLQLLLSLLAFICEEVVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 MENGAVYSPTTEEDPGPARGPRSGLAAYFFMGRLPLLRRVLKGLQLLLSLLAFICEEVVS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 QCTLCGGLYFFEFVSCSAFLLSLLILIVYCTPFYERVDTTKVKSSDFYITLGTGCVFLLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 QCTLCGGLYFFEFVSCSAFLLSLLILIVYCTPFYERVDTTKVKSSDFYITLGTGCVFLLA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 SIIFVSTHDRTSAEIAAIVFGFIASFMFLLDFITMLYEKRQESQLRKPENTTRAEALTEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 SIIFVSTHDRTSAEIAAIVFGFIASFMFLLDFITMLYEKRQESQLRKPENTTRAEALTEP 130 140 150 160 170 180 pF1KE3 LNA ::: CCDS26 LNA >>CCDS42170.1 CMTM4 gene_id:146223|Hs108|chr16 (208 aa) initn: 330 init1: 310 opt: 329 Z-score: 440.2 bits: 88.2 E(32554): 3.4e-18 Smith-Waterman score: 329; 35.9% identity (65.7% similar) in 181 aa overlap (1-179:19-193) 10 20 30 40 pF1KE3 MENGAV--YSPTTEEDPGPARGPRSGLAAYFFMGRLPLLRRV : .:: :.:::: : : .:: . : : : CCDS42 MRSGEELDGFEGEASSTSMISGASSPYQPTTE--PVSQRRGLAGLRCDPDYLRGALGR-- 10 20 30 40 50 50 60 70 80 90 100 pF1KE3 LKGLQLLLSLLAFICEEVVSQCTLCGGLYFFEFVSCSAFLLSLLILIVYCTPFYERVDTT :: :..:.:.:::: :.. :. : :::::::::::::... ..::.. .. :. CCDS42 LKVAQVILALIAFICIETIMACSPCEGLYFFEFVSCSAFVVTGVLLIMFSLNLHMRIPQI 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE3 KVKSSDFYITLGTGCVFLLASIIFVSTHDRTSAEIAAIVFGFIASFMFLLDFITMLYEKR . . .:. : .. .:..:::.... . :..:::::..:::.:. . .. :.: .. CCDS42 NWNLTDLVNTGLSAFLFFIASIVLAALNHRAGAEIAAVIFGFLATAAYAVN--TFLAVQK 120 130 140 150 160 170 170 180 pF1KE3 QESQLRKPENTTRAEALTEPLNA . ..:. .. .: :: CCDS42 WRVSVRQQSTNDYIRARTESRDVDSRPEIQRLDT 180 190 200 >>CCDS10817.1 CMTM4 gene_id:146223|Hs108|chr16 (234 aa) initn: 330 init1: 310 opt: 329 Z-score: 439.5 bits: 88.3 E(32554): 3.7e-18 Smith-Waterman score: 329; 35.9% identity (65.7% similar) in 181 aa overlap (1-179:19-193) 10 20 30 40 pF1KE3 MENGAV--YSPTTEEDPGPARGPRSGLAAYFFMGRLPLLRRV : .:: :.:::: : : .:: . : : : CCDS10 MRSGEELDGFEGEASSTSMISGASSPYQPTTE--PVSQRRGLAGLRCDPDYLRGALGR-- 10 20 30 40 50 50 60 70 80 90 100 pF1KE3 LKGLQLLLSLLAFICEEVVSQCTLCGGLYFFEFVSCSAFLLSLLILIVYCTPFYERVDTT :: :..:.:.:::: :.. :. : :::::::::::::... ..::.. .. :. CCDS10 LKVAQVILALIAFICIETIMACSPCEGLYFFEFVSCSAFVVTGVLLIMFSLNLHMRIPQI 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE3 KVKSSDFYITLGTGCVFLLASIIFVSTHDRTSAEIAAIVFGFIASFMFLLDFITMLYEKR . . .:. : .. .:..:::.... . :..:::::..:::.:. . .. :.: .. CCDS10 NWNLTDLVNTGLSAFLFFIASIVLAALNHRAGAEIAAVIFGFLATAAYAVN--TFLAVQK 120 130 140 150 160 170 170 180 pF1KE3 QESQLRKPENTTRAEALTEPLNA . ..:. .. .: :: CCDS10 WRVSVRQQSTNDYIRARTESRDVDSRPEIQRLDTFSYSTNVTVRKKSPTNLLSLNHWQLA 180 190 200 210 220 230 183 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 17:52:30 2016 done: Sun Nov 6 17:52:30 2016 Total Scan time: 1.850 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]