FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3038, 173 aa 1>>>pF1KE3038 173 - 173 aa - 173 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8378+/-0.000994; mu= 14.7250+/- 0.060 mean_var=58.1726+/-11.947, 0's: 0 Z-trim(103.5): 31 B-trim: 0 in 0/50 Lambda= 0.168157 statistics sampled from 7418 (7436) to 7418 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.602), E-opt: 0.2 (0.228), width: 16 Scan time: 1.770 The best scores are: opt bits E(32554) CCDS2652.1 CMTM8 gene_id:152189|Hs108|chr3 ( 173) 1116 279.0 1e-75 CCDS82753.1 CMTM8 gene_id:152189|Hs108|chr3 ( 115) 445 116.1 7.5e-27 CCDS10777.1 PLLP gene_id:51090|Hs108|chr16 ( 182) 409 107.4 4.6e-24 CCDS2085.1 MALL gene_id:7851|Hs108|chr2 ( 153) 228 63.5 6.6e-11 CCDS2006.1 MAL gene_id:4118|Hs108|chr2 ( 153) 227 63.2 7.9e-11 >>CCDS2652.1 CMTM8 gene_id:152189|Hs108|chr3 (173 aa) initn: 1116 init1: 1116 opt: 1116 Z-score: 1472.7 bits: 279.0 E(32554): 1e-75 Smith-Waterman score: 1116; 98.8% identity (98.8% similar) in 173 aa overlap (1-173:1-173) 10 20 30 40 50 60 pF1KE3 MEEPQRARSHTVTTTASSFAENFSTSSSSFAYDREFLRTLHGFLIVAEIVLGLLVWTLIA :::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::: CCDS26 MEEPQRARSHTVTTTASSFAENFSTSSSSFAYDREFLRTLPGFLIVAEIVLGLLVWTLIA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 GTEYFRVPAFGWVMFVAVSYWVLTVFFLIIYITMTYTRIPQVPWTTVGLCFNGSAFVLYL :::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::: CCDS26 GTEYFRVPAFGWVMFVAVFYWVLTVFFLIIYITMTYTRIPQVPWTTVGLCFNGSAFVLYL 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 SAAVVDASSVSPERDSHNFNSWAASSFFAFLVTICYAGNTYFSFIAWRSRTIQ ::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 SAAVVDASSVSPERDSHNFNSWAASSFFAFLVTICYAGNTYFSFIAWRSRTIQ 130 140 150 160 170 >>CCDS82753.1 CMTM8 gene_id:152189|Hs108|chr3 (115 aa) initn: 464 init1: 445 opt: 445 Z-score: 595.6 bits: 116.1 E(32554): 7.5e-27 Smith-Waterman score: 606; 65.9% identity (65.9% similar) in 173 aa overlap (1-173:1-115) 10 20 30 40 50 60 pF1KE3 MEEPQRARSHTVTTTASSFAENFSTSSSSFAYDREFLRTLHGFLIVAEIVLGLLVWTLIA :::::::::::::::::::::::::::::::::::::::: :::::::: CCDS82 MEEPQRARSHTVTTTASSFAENFSTSSSSFAYDREFLRTLPGFLIVAEI----------- 10 20 30 40 70 80 90 100 110 120 pF1KE3 GTEYFRVPAFGWVMFVAVSYWVLTVFFLIIYITMTYTRIPQVPWTTVGLCFNGSAFVLYL ::::::::::::: CCDS82 -----------------------------------------------GLCFNGSAFVLYL 50 60 130 140 150 160 170 pF1KE3 SAAVVDASSVSPERDSHNFNSWAASSFFAFLVTICYAGNTYFSFIAWRSRTIQ ::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 SAAVVDASSVSPERDSHNFNSWAASSFFAFLVTICYAGNTYFSFIAWRSRTIQ 70 80 90 100 110 >>CCDS10777.1 PLLP gene_id:51090|Hs108|chr16 (182 aa) initn: 259 init1: 259 opt: 409 Z-score: 545.4 bits: 107.4 E(32554): 4.6e-24 Smith-Waterman score: 409; 42.1% identity (71.1% similar) in 159 aa overlap (12-168:8-166) 10 20 30 40 50 60 pF1KE3 MEEPQRARSHTVTTTASSFAENFSTSSSSFAYDREFLRTLHGFLIVAEIVLGLLVWTLIA :.: .:: :.. .: :.. : :.:. : :.. ..:::::::.::: CCDS10 MAEFPSKVSTRTSSPAQGAEASVSALRPDLGFVRSRLGALMLLQLVLGLLVWALIA 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 GTEYFRVPAFGWVMFVAVSYWVLTVFFLIIYITMTYTRIPQVPWTTVGLCFNGSAFVLYL : : ::.:::::::: :..:. .. .:. . . .. .::: : . :: :: :::. CCDS10 DTPYHLYPAYGWVMFVAVFLWLVTIVLFNLYLFQLHMKLYMVPWPLVLMIFNISATVLYI 60 70 80 90 100 110 130 140 150 160 170 pF1KE3 SAAVVDASSV--SPERDSHNFNSWAASSFFAFLVTICYAGNTYFSFIAWRSRTIQ .: .. ...: . : .. .:. ::.:::: :: : :. ...::. ::: CCDS10 TAFIACSAAVDLTSLRGTRPYNQRAAASFFACLVMIAYGVSAFFSYQAWRGVGSNAATSQ 120 130 140 150 160 170 CCDS10 MAGGYA 180 >>CCDS2085.1 MALL gene_id:7851|Hs108|chr2 (153 aa) initn: 194 init1: 136 opt: 228 Z-score: 309.2 bits: 63.5 E(32554): 6.6e-11 Smith-Waterman score: 228; 33.9% identity (67.7% similar) in 124 aa overlap (36-156:23-143) 10 20 30 40 50 60 pF1KE3 RARSHTVTTTASSFAENFSTSSSSFAYDREFLRTLHGFLIVAEIVLGLLVWTLIAGTEYF :: .:.. :...:.::::..:.:. CCDS20 MASPDPPATSYAPSDVPSGVALFLTIPFAFFL-PELIFGFLVWTMVAATHIV 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 RVPAFGWVMFVAVSYWVLTVFFLIIYITMTYTRIPQVPWTTVGLCFNGSAFVLYLSAAV- ::::.:... ......::. :. : :. . : .. ..:.. .::.:::: CCDS20 YPLLQGWVMYVSLTSFLISLMFLLSYLFGFYKRFES--WRVLDSLYHGTTGILYMSAAVL 60 70 80 90 100 130 140 150 160 170 pF1KE3 -VDASSVSPER-DSHNFNSWAASSFFAFLVTICYAGNTYFSFIAWRSRTIQ : :. :: . : . . .:.:::::..:. : CCDS20 QVHATIVSEKLLDPRIYYINSAASFFAFIATLLYILHAFSIYYH 110 120 130 140 150 >>CCDS2006.1 MAL gene_id:4118|Hs108|chr2 (153 aa) initn: 161 init1: 125 opt: 227 Z-score: 307.9 bits: 63.2 E(32554): 7.9e-11 Smith-Waterman score: 227; 28.9% identity (65.1% similar) in 149 aa overlap (24-169:6-152) 10 20 30 40 50 60 pF1KE3 MEEPQRARSHTVTTTASSFAENFSTSSSSFAYDREFLRTLHGFLIVAEIVLGLLVWTLIA .:..:.. . :: .:.. :...: ::: :.: CCDS20 MAPAAATGGSTLPSGFSVFTTLPDLLFIFEFIFGGLVWILVA 10 20 30 40 70 80 90 100 110 120 pF1KE3 GTEYFRVPAFGWVMFVAVSYWVLTVFFLIIYITMTYTRIPQVPWTTVGLCFNGSAFVLYL .. . ::::::.: .: :. ..:.:: .. .. :.:. .. .: ..:: CCDS20 SSLVPWPLVQGWVMFVSVFCFVATTTLIILYIIGAHG--GETSWVTLDAAYHCTAALFYL 50 60 70 80 90 100 130 140 150 160 170 pF1KE3 SAAVVDASSVSPERDSHNFNSW---AASSFFAFLVTICYAGNTYFSFIAWRSRTIQ ::.:..: .. .:. .. . :. :....:. :. .. ::.: :.: CCDS20 SASVLEALATITMQDGFTYRHYHENIAAVVFSYIATLLYVVHAVFSLIRWKSS 110 120 130 140 150 173 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 02:20:40 2016 done: Sun Nov 6 02:20:40 2016 Total Scan time: 1.770 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]