FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3051, 193 aa 1>>>pF1KE3051 193 - 193 aa - 193 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.1364+/-0.000278; mu= 10.1890+/- 0.018 mean_var=93.0815+/-18.586, 0's: 0 Z-trim(120.8): 116 B-trim: 1507 in 1/58 Lambda= 0.132936 statistics sampled from 36444 (36569) to 36444 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.785), E-opt: 0.2 (0.429), width: 16 Scan time: 6.540 The best scores are: opt bits E(85289) NP_003332 (OMIM: 602916) ubiquitin-conjugating enz ( 193) 1289 256.3 2.2e-68 NP_689866 (OMIM: 602163) ubiquitin-conjugating enz ( 201) 1097 219.5 2.8e-57 XP_005265489 (OMIM: 602163) PREDICTED: ubiquitin-c ( 201) 1097 219.5 2.8e-57 NP_001265484 (OMIM: 604151) ubiquitin-conjugating ( 207) 1057 211.8 5.8e-55 NP_872619 (OMIM: 604151) ubiquitin-conjugating enz ( 207) 1057 211.8 5.8e-55 NP_001265483 (OMIM: 604151) ubiquitin-conjugating ( 207) 1057 211.8 5.8e-55 XP_005246301 (OMIM: 604151) PREDICTED: ubiquitin-c ( 207) 1057 211.8 5.8e-55 NP_006348 (OMIM: 604151) ubiquitin-conjugating enz ( 207) 1057 211.8 5.8e-55 NP_001189405 (OMIM: 602916) ubiquitin-conjugating ( 160) 998 200.4 1.2e-51 XP_005265490 (OMIM: 602163) PREDICTED: ubiquitin-c ( 189) 890 179.8 2.4e-45 NP_872607 (OMIM: 602916) ubiquitin-conjugating enz ( 176) 878 177.5 1.1e-44 XP_005265488 (OMIM: 602916) PREDICTED: ubiquitin-c ( 167) 783 159.2 3.2e-39 NP_003329 (OMIM: 602961) ubiquitin-conjugating enz ( 147) 670 137.5 9.7e-33 NP_003330 (OMIM: 602962) ubiquitin-conjugating enz ( 147) 663 136.2 2.5e-32 NP_871621 (OMIM: 602963) ubiquitin-conjugating enz ( 148) 663 136.2 2.5e-32 NP_871617 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 659 135.4 4.2e-32 NP_003331 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 659 135.4 4.2e-32 NP_871620 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 659 135.4 4.2e-32 NP_871619 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 659 135.4 4.2e-32 NP_871615 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 659 135.4 4.2e-32 NP_871616 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 659 135.4 4.2e-32 NP_871618 (OMIM: 602963) ubiquitin-conjugating enz ( 147) 659 135.4 4.2e-32 NP_871622 (OMIM: 602963) ubiquitin-conjugating enz ( 149) 646 132.9 2.4e-31 XP_016865309 (OMIM: 602962) PREDICTED: ubiquitin-c ( 173) 638 131.4 7.8e-31 NP_862821 (OMIM: 602962) ubiquitin-conjugating enz ( 118) 538 112.1 3.4e-25 XP_016864073 (OMIM: 602963) PREDICTED: ubiquitin-c ( 118) 533 111.2 6.6e-25 NP_001287724 (OMIM: 602963) ubiquitin-conjugating ( 118) 533 111.2 6.6e-25 XP_016872098 (OMIM: 602961) PREDICTED: ubiquitin-c ( 110) 504 105.6 2.9e-23 NP_001191809 (OMIM: 602961) ubiquitin-conjugating ( 109) 483 101.6 4.8e-22 NP_003339 (OMIM: 603679) ubiquitin-conjugating enz ( 152) 429 91.3 8.2e-19 NP_054895 (OMIM: 610538,616435) ubiquitin-conjugat ( 197) 400 85.8 4.8e-17 NP_003327 (OMIM: 300860,312180) ubiquitin-conjugat ( 152) 398 85.4 5e-17 NP_003328 (OMIM: 179095) ubiquitin-conjugating enz ( 152) 395 84.8 7.5e-17 NP_005330 (OMIM: 602846) ubiquitin-conjugating enz ( 200) 363 78.7 6.6e-15 NP_003338 (OMIM: 603721) ubiquitin-conjugating enz ( 154) 337 73.7 1.7e-13 NP_001297255 (OMIM: 610538,616435) ubiquitin-conju ( 167) 337 73.7 1.8e-13 NP_001269090 (OMIM: 300860,312180) ubiquitin-conju ( 119) 331 72.4 3e-13 NP_001243284 (OMIM: 603721) ubiquitin-conjugating ( 212) 330 72.4 5.6e-13 NP_008950 (OMIM: 605574) ubiquitin-conjugating enz ( 179) 325 71.4 9.4e-13 NP_001104582 (OMIM: 602846) ubiquitin-conjugating ( 157) 324 71.2 9.7e-13 NP_001243285 (OMIM: 603721) ubiquitin-conjugating ( 122) 313 69.0 3.4e-12 NP_919235 (OMIM: 601661) SUMO-conjugating enzyme U ( 158) 310 68.5 6.3e-12 NP_003336 (OMIM: 601661) SUMO-conjugating enzyme U ( 158) 310 68.5 6.3e-12 NP_919237 (OMIM: 601661) SUMO-conjugating enzyme U ( 158) 310 68.5 6.3e-12 XP_016879129 (OMIM: 601661) PREDICTED: SUMO-conjug ( 158) 310 68.5 6.3e-12 NP_919236 (OMIM: 601661) SUMO-conjugating enzyme U ( 158) 310 68.5 6.3e-12 NP_060769 (OMIM: 614277) ubiquitin-conjugating enz ( 180) 309 68.3 8e-12 NP_001257944 (OMIM: 614277) ubiquitin-conjugating ( 188) 309 68.3 8.2e-12 NP_055316 (OMIM: 610309) ubiquitin-conjugating enz ( 222) 304 67.4 1.8e-11 NP_001001481 (OMIM: 614277) ubiquitin-conjugating ( 191) 302 67.0 2.1e-11 >>NP_003332 (OMIM: 602916) ubiquitin-conjugating enzyme (193 aa) initn: 1289 init1: 1289 opt: 1289 Z-score: 1348.6 bits: 256.3 E(85289): 2.2e-68 Smith-Waterman score: 1289; 100.0% identity (100.0% similar) in 193 aa overlap (1-193:1-193) 10 20 30 40 50 60 pF1KE3 MSDDDSRASTSSSSSSSSNQQTEKETNTPKKKESKVSMSKNSKLLSTSAKRIQKELADIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MSDDDSRASTSSSSSSSSNQQTEKETNTPKKKESKVSMSKNSKLLSTSAKRIQKELADIT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 LDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIY 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 HCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 HCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEH 130 140 150 160 170 180 190 pF1KE3 DRMARQWTKRYAT ::::::::::::: NP_003 DRMARQWTKRYAT 190 >>NP_689866 (OMIM: 602163) ubiquitin-conjugating enzyme (201 aa) initn: 1044 init1: 1044 opt: 1097 Z-score: 1149.3 bits: 219.5 E(85289): 2.8e-57 Smith-Waterman score: 1097; 84.5% identity (93.3% similar) in 194 aa overlap (4-193:9-201) 10 20 30 40 50 pF1KE3 MSDDDSRASTSSSSSS----SSNQQTEKETNTPKKKESKVSMSKNSKLLSTSAKR ::: .....::.. : .:. :.: :::::.:.: ::.. ::::::: NP_689 MSTEAQRVDDSPSTSGGSSDGDQRESVQQEPEREQVQPKKKEGKIS-SKTAAKLSTSAKR 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 IQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPP ::::::.::::::::::::::::::::::::::::::::::::::::::::.:.:::::: NP_689 IQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPP 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 KVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_689 KVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIAT 120 130 140 150 160 170 180 190 pF1KE3 QYMTNRAEHDRMARQWTKRYAT :::::::::::::::::::::: NP_689 QYMTNRAEHDRMARQWTKRYAT 180 190 200 >>XP_005265489 (OMIM: 602163) PREDICTED: ubiquitin-conju (201 aa) initn: 1044 init1: 1044 opt: 1097 Z-score: 1149.3 bits: 219.5 E(85289): 2.8e-57 Smith-Waterman score: 1097; 84.5% identity (93.3% similar) in 194 aa overlap (4-193:9-201) 10 20 30 40 50 pF1KE3 MSDDDSRASTSSSSSS----SSNQQTEKETNTPKKKESKVSMSKNSKLLSTSAKR ::: .....::.. : .:. :.: :::::.:.: ::.. ::::::: XP_005 MSTEAQRVDDSPSTSGGSSDGDQRESVQQEPEREQVQPKKKEGKIS-SKTAAKLSTSAKR 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 IQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPP ::::::.::::::::::::::::::::::::::::::::::::::::::::.:.:::::: XP_005 IQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPP 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 KVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 KVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIAT 120 130 140 150 160 170 180 190 pF1KE3 QYMTNRAEHDRMARQWTKRYAT :::::::::::::::::::::: XP_005 QYMTNRAEHDRMARQWTKRYAT 180 190 200 >>NP_001265484 (OMIM: 604151) ubiquitin-conjugating enzy (207 aa) initn: 1036 init1: 1005 opt: 1057 Z-score: 1107.7 bits: 211.8 E(85289): 5.8e-55 Smith-Waterman score: 1057; 79.1% identity (91.0% similar) in 201 aa overlap (2-193:8-207) 10 20 30 40 pF1KE3 MSDDDSRASTSSSSSSSS---------NQQTEKETNTPKKKESKVSMSKNSKLL :::.: ...:.::.... .:. .: . : .::..:.: ::.. : NP_001 MSSDRQRSDDESPSTSSGSSDADQRDPAAPEPEEQEERKPSATQQKKNTKLS-SKTTAKL 10 20 30 40 50 50 60 70 80 90 100 pF1KE3 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPE ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::. . NP_001 STSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSD 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE3 YPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL 120 130 140 150 160 170 170 180 190 pF1KE3 VGSIATQYMTNRAEHDRMARQWTKRYAT ::::::::.::::::::.:::::::::: NP_001 VGSIATQYLTNRAEHDRIARQWTKRYAT 180 190 200 >>NP_872619 (OMIM: 604151) ubiquitin-conjugating enzyme (207 aa) initn: 1036 init1: 1005 opt: 1057 Z-score: 1107.7 bits: 211.8 E(85289): 5.8e-55 Smith-Waterman score: 1057; 79.1% identity (91.0% similar) in 201 aa overlap (2-193:8-207) 10 20 30 40 pF1KE3 MSDDDSRASTSSSSSSSS---------NQQTEKETNTPKKKESKVSMSKNSKLL :::.: ...:.::.... .:. .: . : .::..:.: ::.. : NP_872 MSSDRQRSDDESPSTSSGSSDADQRDPAAPEPEEQEERKPSATQQKKNTKLS-SKTTAKL 10 20 30 40 50 50 60 70 80 90 100 pF1KE3 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPE ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::. . NP_872 STSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSD 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE3 YPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_872 YPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL 120 130 140 150 160 170 170 180 190 pF1KE3 VGSIATQYMTNRAEHDRMARQWTKRYAT ::::::::.::::::::.:::::::::: NP_872 VGSIATQYLTNRAEHDRIARQWTKRYAT 180 190 200 >>NP_001265483 (OMIM: 604151) ubiquitin-conjugating enzy (207 aa) initn: 1036 init1: 1005 opt: 1057 Z-score: 1107.7 bits: 211.8 E(85289): 5.8e-55 Smith-Waterman score: 1057; 79.1% identity (91.0% similar) in 201 aa overlap (2-193:8-207) 10 20 30 40 pF1KE3 MSDDDSRASTSSSSSSSS---------NQQTEKETNTPKKKESKVSMSKNSKLL :::.: ...:.::.... .:. .: . : .::..:.: ::.. : NP_001 MSSDRQRSDDESPSTSSGSSDADQRDPAAPEPEEQEERKPSATQQKKNTKLS-SKTTAKL 10 20 30 40 50 50 60 70 80 90 100 pF1KE3 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPE ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::. . NP_001 STSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSD 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE3 YPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL 120 130 140 150 160 170 170 180 190 pF1KE3 VGSIATQYMTNRAEHDRMARQWTKRYAT ::::::::.::::::::.:::::::::: NP_001 VGSIATQYLTNRAEHDRIARQWTKRYAT 180 190 200 >>XP_005246301 (OMIM: 604151) PREDICTED: ubiquitin-conju (207 aa) initn: 1036 init1: 1005 opt: 1057 Z-score: 1107.7 bits: 211.8 E(85289): 5.8e-55 Smith-Waterman score: 1057; 79.1% identity (91.0% similar) in 201 aa overlap (2-193:8-207) 10 20 30 40 pF1KE3 MSDDDSRASTSSSSSSSS---------NQQTEKETNTPKKKESKVSMSKNSKLL :::.: ...:.::.... .:. .: . : .::..:.: ::.. : XP_005 MSSDRQRSDDESPSTSSGSSDADQRDPAAPEPEEQEERKPSATQQKKNTKLS-SKTTAKL 10 20 30 40 50 50 60 70 80 90 100 pF1KE3 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPE ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::. . XP_005 STSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSD 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE3 YPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 YPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL 120 130 140 150 160 170 170 180 190 pF1KE3 VGSIATQYMTNRAEHDRMARQWTKRYAT ::::::::.::::::::.:::::::::: XP_005 VGSIATQYLTNRAEHDRIARQWTKRYAT 180 190 200 >>NP_006348 (OMIM: 604151) ubiquitin-conjugating enzyme (207 aa) initn: 1036 init1: 1005 opt: 1057 Z-score: 1107.7 bits: 211.8 E(85289): 5.8e-55 Smith-Waterman score: 1057; 79.1% identity (91.0% similar) in 201 aa overlap (2-193:8-207) 10 20 30 40 pF1KE3 MSDDDSRASTSSSSSSSS---------NQQTEKETNTPKKKESKVSMSKNSKLL :::.: ...:.::.... .:. .: . : .::..:.: ::.. : NP_006 MSSDRQRSDDESPSTSSGSSDADQRDPAAPEPEEQEERKPSATQQKKNTKLS-SKTTAKL 10 20 30 40 50 50 60 70 80 90 100 pF1KE3 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPE ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::. . NP_006 STSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSD 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE3 YPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 YPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL 120 130 140 150 160 170 170 180 190 pF1KE3 VGSIATQYMTNRAEHDRMARQWTKRYAT ::::::::.::::::::.:::::::::: NP_006 VGSIATQYLTNRAEHDRIARQWTKRYAT 180 190 200 >>NP_001189405 (OMIM: 602916) ubiquitin-conjugating enzy (160 aa) initn: 998 init1: 998 opt: 998 Z-score: 1048.2 bits: 200.4 E(85289): 1.2e-51 Smith-Waterman score: 998; 100.0% identity (100.0% similar) in 143 aa overlap (51-193:18-160) 30 40 50 60 70 80 pF1KE3 QTEKETNTPKKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWR :::::::::::::::::::::::::::::: NP_001 MKEVGRPREVRGRPGKSRIQKELADITLDPPPNCSAGPKGDNIYEWR 10 20 30 40 90 100 110 120 130 140 pF1KE3 STILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 STILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWS 50 60 70 80 90 100 150 160 170 180 190 pF1KE3 PALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT ::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT 110 120 130 140 150 160 >>XP_005265490 (OMIM: 602163) PREDICTED: ubiquitin-conju (189 aa) initn: 891 init1: 829 opt: 890 Z-score: 935.2 bits: 179.8 E(85289): 2.4e-45 Smith-Waterman score: 890; 81.1% identity (92.1% similar) in 164 aa overlap (4-163:9-171) 10 20 30 40 50 pF1KE3 MSDDDSRASTSSSSSS----SSNQQTEKETNTPKKKESKVSMSKNSKLLSTSAKR ::: .....::.. : .:. :.: :::::.:.: ::.. ::::::: XP_005 MSTEAQRVDDSPSTSGGSSDGDQRESVQQEPEREQVQPKKKEGKIS-SKTAAKLSTSAKR 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 IQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPP ::::::.::::::::::::::::::::::::::::::::::::::::::::.:.:::::: XP_005 IQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPP 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 KVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIAT ::::::::::::::::::::::::::::::::::::::::::::::::::.: XP_005 KVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPGDFEAWPALP 120 130 140 150 160 170 180 190 pF1KE3 QYMTNRAEHDRMARQWTKRYAT XP_005 PSQLKWNLLP 180 193 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 17:54:28 2016 done: Sun Nov 6 17:54:29 2016 Total Scan time: 6.540 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]