FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3051, 193 aa 1>>>pF1KE3051 193 - 193 aa - 193 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.9962+/-0.000637; mu= 11.0472+/- 0.039 mean_var=90.8539+/-17.517, 0's: 0 Z-trim(113.2): 61 B-trim: 31 in 1/53 Lambda= 0.134556 statistics sampled from 13779 (13843) to 13779 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.786), E-opt: 0.2 (0.425), width: 16 Scan time: 1.930 The best scores are: opt bits E(32554) CCDS2638.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 193) 1289 259.2 1.1e-69 CCDS2637.1 UBE2E2 gene_id:7325|Hs108|chr3 ( 201) 1097 221.9 1.9e-58 CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2 ( 207) 1057 214.2 4.3e-56 CCDS56244.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 160) 998 202.7 9.9e-53 CCDS2639.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 176) 878 179.4 1.1e-45 CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 147) 670 139.0 1.4e-33 CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 147) 663 137.6 3.5e-33 CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 148) 663 137.6 3.5e-33 CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 ( 147) 661 137.2 4.6e-33 CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 147) 659 136.8 6e-33 CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 149) 646 134.3 3.5e-32 CCDS47275.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 118) 538 113.3 5.9e-26 CCDS75172.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 118) 533 112.3 1.2e-25 CCDS73139.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 109) 483 102.6 9e-23 CCDS31875.1 UBE2N gene_id:7334|Hs108|chr12 ( 152) 429 92.2 1.7e-19 CCDS1425.1 UBE2T gene_id:29089|Hs108|chr1 ( 197) 400 86.6 1e-17 CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX ( 152) 398 86.2 1.1e-17 CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5 ( 152) 395 85.6 1.6e-17 CCDS33976.1 UBE2K gene_id:3093|Hs108|chr4 ( 200) 363 79.5 1.5e-15 CCDS13790.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 154) 337 74.3 4.1e-14 CCDS78500.1 UBE2A gene_id:7319|Hs108|chrX ( 119) 331 73.1 7.4e-14 CCDS58795.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 212) 330 73.1 1.3e-13 CCDS13370.1 UBE2C gene_id:11065|Hs108|chr20 ( 179) 325 72.0 2.3e-13 CCDS47043.1 UBE2K gene_id:3093|Hs108|chr4 ( 157) 324 71.8 2.4e-13 CCDS58796.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 122) 313 69.6 8.5e-13 CCDS10433.1 UBE2I gene_id:7329|Hs108|chr16 ( 158) 310 69.1 1.6e-12 CCDS47874.2 UBE2W gene_id:55284|Hs108|chr8 ( 180) 309 68.9 2e-12 CCDS33114.1 UBE2S gene_id:27338|Hs108|chr19 ( 222) 304 68.0 4.6e-12 CCDS47875.2 UBE2W gene_id:55284|Hs108|chr8 ( 191) 302 67.6 5.4e-12 CCDS13374.1 UBE2C gene_id:11065|Hs108|chr20 ( 140) 294 66.0 1.2e-11 CCDS7960.1 UBE2L6 gene_id:9246|Hs108|chr11 ( 153) 293 65.8 1.5e-11 CCDS12987.1 UBE2M gene_id:9040|Hs108|chr19 ( 183) 290 65.3 2.6e-11 >>CCDS2638.1 UBE2E1 gene_id:7324|Hs108|chr3 (193 aa) initn: 1289 init1: 1289 opt: 1289 Z-score: 1364.3 bits: 259.2 E(32554): 1.1e-69 Smith-Waterman score: 1289; 100.0% identity (100.0% similar) in 193 aa overlap (1-193:1-193) 10 20 30 40 50 60 pF1KE3 MSDDDSRASTSSSSSSSSNQQTEKETNTPKKKESKVSMSKNSKLLSTSAKRIQKELADIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 MSDDDSRASTSSSSSSSSNQQTEKETNTPKKKESKVSMSKNSKLLSTSAKRIQKELADIT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 LDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIY 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 HCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 HCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEH 130 140 150 160 170 180 190 pF1KE3 DRMARQWTKRYAT ::::::::::::: CCDS26 DRMARQWTKRYAT 190 >>CCDS2637.1 UBE2E2 gene_id:7325|Hs108|chr3 (201 aa) initn: 1044 init1: 1044 opt: 1097 Z-score: 1162.6 bits: 221.9 E(32554): 1.9e-58 Smith-Waterman score: 1097; 84.5% identity (93.3% similar) in 194 aa overlap (4-193:9-201) 10 20 30 40 50 pF1KE3 MSDDDSRASTSSSSSS----SSNQQTEKETNTPKKKESKVSMSKNSKLLSTSAKR ::: .....::.. : .:. :.: :::::.:.: ::.. ::::::: CCDS26 MSTEAQRVDDSPSTSGGSSDGDQRESVQQEPEREQVQPKKKEGKIS-SKTAAKLSTSAKR 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 IQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPP ::::::.::::::::::::::::::::::::::::::::::::::::::::.:.:::::: CCDS26 IQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPP 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 KVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 KVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIAT 120 130 140 150 160 170 180 190 pF1KE3 QYMTNRAEHDRMARQWTKRYAT :::::::::::::::::::::: CCDS26 QYMTNRAEHDRMARQWTKRYAT 180 190 200 >>CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2 (207 aa) initn: 1036 init1: 1005 opt: 1057 Z-score: 1120.5 bits: 214.2 E(32554): 4.3e-56 Smith-Waterman score: 1057; 79.1% identity (91.0% similar) in 201 aa overlap (2-193:8-207) 10 20 30 40 pF1KE3 MSDDDSRASTSSSSSSSS---------NQQTEKETNTPKKKESKVSMSKNSKLL :::.: ...:.::.... .:. .: . : .::..:.: ::.. : CCDS22 MSSDRQRSDDESPSTSSGSSDADQRDPAAPEPEEQEERKPSATQQKKNTKLS-SKTTAKL 10 20 30 40 50 50 60 70 80 90 100 pF1KE3 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPE ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::. . CCDS22 STSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSD 60 70 80 90 100 110 110 120 130 140 150 160 pF1KE3 YPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 YPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL 120 130 140 150 160 170 170 180 190 pF1KE3 VGSIATQYMTNRAEHDRMARQWTKRYAT ::::::::.::::::::.:::::::::: CCDS22 VGSIATQYLTNRAEHDRIARQWTKRYAT 180 190 200 >>CCDS56244.1 UBE2E1 gene_id:7324|Hs108|chr3 (160 aa) initn: 998 init1: 998 opt: 998 Z-score: 1060.2 bits: 202.7 E(32554): 9.9e-53 Smith-Waterman score: 998; 100.0% identity (100.0% similar) in 143 aa overlap (51-193:18-160) 30 40 50 60 70 80 pF1KE3 QTEKETNTPKKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWR :::::::::::::::::::::::::::::: CCDS56 MKEVGRPREVRGRPGKSRIQKELADITLDPPPNCSAGPKGDNIYEWR 10 20 30 40 90 100 110 120 130 140 pF1KE3 STILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 STILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWS 50 60 70 80 90 100 150 160 170 180 190 pF1KE3 PALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT ::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 PALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT 110 120 130 140 150 160 >>CCDS2639.1 UBE2E1 gene_id:7324|Hs108|chr3 (176 aa) initn: 1153 init1: 876 opt: 878 Z-score: 933.7 bits: 179.4 E(32554): 1.1e-45 Smith-Waterman score: 1123; 91.2% identity (91.2% similar) in 193 aa overlap (1-193:1-176) 10 20 30 40 50 60 pF1KE3 MSDDDSRASTSSSSSSSSNQQTEKETNTPKKKESKVSMSKNSKLLSTSAKRIQKELADIT :::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 MSDDDSRASTSSSSSSSSNQQTEKETNTPKKKESKVSMSKNSKLLSTSAK---------- 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 LDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIY ::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 -------SAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIY 60 70 80 90 100 130 140 150 160 170 180 pF1KE3 HCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 HCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEH 110 120 130 140 150 160 190 pF1KE3 DRMARQWTKRYAT ::::::::::::: CCDS26 DRMARQWTKRYAT 170 >>CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 (147 aa) initn: 670 init1: 670 opt: 670 Z-score: 716.6 bits: 139.0 E(32554): 1.4e-33 Smith-Waterman score: 670; 62.9% identity (85.3% similar) in 143 aa overlap (50-192:4-146) 20 30 40 50 60 70 pF1KE3 QQTEKETNTPKKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEW :::::::.:. ::: .::::: ::....: CCDS72 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHW 10 20 30 80 90 100 110 120 130 pF1KE3 RSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNW ..::.::: :.:.:::::: . : .:::::::..: :.::: ::::.: ::::::...: CCDS72 QATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQW 40 50 60 70 80 90 140 150 160 170 180 190 pF1KE3 SPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT :::::.::::::::::: : :: :::: .:: : ... ...: ::.::..:: CCDS72 SPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM 100 110 120 130 140 >>CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 (147 aa) initn: 663 init1: 663 opt: 663 Z-score: 709.3 bits: 137.6 E(32554): 3.5e-33 Smith-Waterman score: 663; 65.7% identity (83.9% similar) in 143 aa overlap (50-192:4-146) 20 30 40 50 60 70 pF1KE3 QQTEKETNTPKKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEW :::.::: :.. ::: .::::: ::....: CCDS43 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHW 10 20 30 80 90 100 110 120 130 pF1KE3 RSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNW ..::.:: : :.:::::: : : .::::::::.: ::::: ::::.: ::::::...: CCDS43 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQW 40 50 60 70 80 90 140 150 160 170 180 190 pF1KE3 SPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT ::::::::::::::::: : :: :::: :: : :.: ...:.::.::..:: CCDS43 SPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 100 110 120 130 140 >>CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 (148 aa) initn: 663 init1: 663 opt: 663 Z-score: 709.2 bits: 137.6 E(32554): 3.5e-33 Smith-Waterman score: 663; 65.7% identity (84.6% similar) in 143 aa overlap (50-192:4-146) 20 30 40 50 60 70 pF1KE3 QQTEKETNTPKKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEW :::.:::.:.. ::: .::::: ::....: CCDS36 MALKRINKELSDLARDPPAQCSAGPVGDDMFHW 10 20 30 80 90 100 110 120 130 pF1KE3 RSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNW ..::.:: : :.:::::: : : .::::::::.: ::::: ::::.: ::::::...: CCDS36 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQW 40 50 60 70 80 90 140 150 160 170 180 190 pF1KE3 SPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT ::::::::::::::::: : :: :::: :: : :.: ...:.::.::..:: CCDS36 SPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRLAREWTEKYAML 100 110 120 130 140 >>CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 (147 aa) initn: 661 init1: 661 opt: 661 Z-score: 707.2 bits: 137.2 E(32554): 4.6e-33 Smith-Waterman score: 661; 64.3% identity (83.9% similar) in 143 aa overlap (50-192:4-146) 20 30 40 50 60 70 pF1KE3 QQTEKETNTPKKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEW :::::::.:. ::: .::::: ::....: CCDS54 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHW 10 20 30 80 90 100 110 120 130 pF1KE3 RSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNW ..::.:: : :.:::::: : : .::::::::.: :.::: ::::.: ::::::...: CCDS54 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQW 40 50 60 70 80 90 140 150 160 170 180 190 pF1KE3 SPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT :::::.::::::::::: : :: :::: :: : ..: ...:.::.::..:: CCDS54 SPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLAREWTQKYAM 100 110 120 130 140 >>CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 (147 aa) initn: 659 init1: 659 opt: 659 Z-score: 705.1 bits: 136.8 E(32554): 6e-33 Smith-Waterman score: 659; 65.0% identity (84.6% similar) in 143 aa overlap (50-192:4-146) 20 30 40 50 60 70 pF1KE3 QQTEKETNTPKKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEW :::.:::.:.. ::: .::::: ::....: CCDS36 MALKRINKELSDLARDPPAQCSAGPVGDDMFHW 10 20 30 80 90 100 110 120 130 pF1KE3 RSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNW ..::.:: : :.:::::: : : .::::::::.: ::::: ::::.: ::::::...: CCDS36 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQW 40 50 60 70 80 90 140 150 160 170 180 190 pF1KE3 SPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT ::::::::::::::::: : :: :::: :: : :.: ...:..:.::..:: CCDS36 SPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 100 110 120 130 140 193 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 17:54:28 2016 done: Sun Nov 6 17:54:28 2016 Total Scan time: 1.930 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]