FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3753, 201 aa 1>>>pF1KE3753 201 - 201 aa - 201 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4993+/-0.000623; mu= 14.3161+/- 0.038 mean_var=89.5336+/-17.340, 0's: 0 Z-trim(113.8): 62 B-trim: 0 in 0/54 Lambda= 0.135544 statistics sampled from 14337 (14400) to 14337 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.797), E-opt: 0.2 (0.442), width: 16 Scan time: 2.100 The best scores are: opt bits E(32554) CCDS2637.1 UBE2E2 gene_id:7325|Hs108|chr3 ( 201) 1360 274.8 2.6e-74 CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2 ( 207) 1178 239.2 1.4e-63 CCDS2638.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 193) 1097 223.3 7.5e-59 CCDS56244.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 160) 985 201.3 2.6e-52 CCDS2639.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 176) 894 183.6 6.3e-47 CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 147) 670 139.7 8.4e-34 CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 147) 663 138.3 2.2e-33 CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 148) 663 138.3 2.2e-33 CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 ( 147) 661 138.0 2.9e-33 CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 147) 659 137.6 3.7e-33 CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 149) 646 135.0 2.2e-32 CCDS47275.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 118) 544 115.0 1.9e-26 CCDS75172.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 118) 539 114.0 3.7e-26 CCDS73139.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 109) 489 104.2 3e-23 CCDS31875.1 UBE2N gene_id:7334|Hs108|chr12 ( 152) 427 92.2 1.7e-19 CCDS1425.1 UBE2T gene_id:29089|Hs108|chr1 ( 197) 400 87.0 8.2e-18 CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5 ( 152) 396 86.1 1.2e-17 CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX ( 152) 393 85.6 1.7e-17 CCDS33976.1 UBE2K gene_id:3093|Hs108|chr4 ( 200) 366 80.4 8.3e-16 CCDS13370.1 UBE2C gene_id:11065|Hs108|chr20 ( 179) 338 74.9 3.4e-14 CCDS13790.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 154) 337 74.6 3.5e-14 CCDS47043.1 UBE2K gene_id:3093|Hs108|chr4 ( 157) 327 72.7 1.4e-13 CCDS78500.1 UBE2A gene_id:7319|Hs108|chrX ( 119) 324 72.0 1.7e-13 CCDS58795.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 212) 326 72.6 2e-13 CCDS10433.1 UBE2I gene_id:7329|Hs108|chr16 ( 158) 317 70.7 5.4e-13 CCDS58796.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 122) 309 69.1 1.3e-12 CCDS47874.2 UBE2W gene_id:55284|Hs108|chr8 ( 180) 310 69.4 1.5e-12 CCDS33114.1 UBE2S gene_id:27338|Hs108|chr19 ( 222) 309 69.3 2e-12 CCDS47875.2 UBE2W gene_id:55284|Hs108|chr8 ( 191) 304 68.2 3.6e-12 CCDS12987.1 UBE2M gene_id:9040|Hs108|chr19 ( 183) 302 67.8 4.6e-12 CCDS13374.1 UBE2C gene_id:11065|Hs108|chr20 ( 140) 296 66.6 8.4e-12 CCDS7960.1 UBE2L6 gene_id:9246|Hs108|chr11 ( 153) 283 64.0 5.2e-11 CCDS32532.1 UBE2G1 gene_id:7326|Hs108|chr17 ( 170) 280 63.5 8.5e-11 >>CCDS2637.1 UBE2E2 gene_id:7325|Hs108|chr3 (201 aa) initn: 1360 init1: 1360 opt: 1360 Z-score: 1447.7 bits: 274.8 E(32554): 2.6e-74 Smith-Waterman score: 1360; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201) 10 20 30 40 50 60 pF1KE3 MSTEAQRVDDSPSTSGGSSDGDQRESVQQEPEREQVQPKKKEGKISSKTAAKLSTSAKRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 MSTEAQRVDDSPSTSGGSSDGDQRESVQQEPEREQVQPKKKEGKISSKTAAKLSTSAKRI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 QKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 QKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 VTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 VTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQ 130 140 150 160 170 180 190 200 pF1KE3 YMTNRAEHDRMARQWTKRYAT ::::::::::::::::::::: CCDS26 YMTNRAEHDRMARQWTKRYAT 190 200 >>CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2 (207 aa) initn: 1077 init1: 1077 opt: 1178 Z-score: 1255.2 bits: 239.2 E(32554): 1.4e-63 Smith-Waterman score: 1178; 86.0% identity (93.2% similar) in 207 aa overlap (1-201:1-207) 10 20 30 40 50 pF1KE3 MSTEAQRVDD-SPSTSGGSSDGDQRESVQQEPE-REQVQP----KKKEGKISSKTAAKLS ::.. :: :: :::::.::::.:::. . ::: .:. .: .::. :.::::.:::: CCDS22 MSSDRQRSDDESPSTSSGSSDADQRDPAAPEPEEQEERKPSATQQKKNTKLSSKTTAKLS 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE3 TSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDY ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :: CCDS22 TSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDY 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE3 PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLV 130 140 150 160 170 180 180 190 200 pF1KE3 GSIATQYMTNRAEHDRMARQWTKRYAT :::::::.::::::::.:::::::::: CCDS22 GSIATQYLTNRAEHDRIARQWTKRYAT 190 200 >>CCDS2638.1 UBE2E1 gene_id:7324|Hs108|chr3 (193 aa) initn: 1044 init1: 1044 opt: 1097 Z-score: 1170.0 bits: 223.3 E(32554): 7.5e-59 Smith-Waterman score: 1097; 84.5% identity (93.3% similar) in 194 aa overlap (9-201:4-193) 10 20 30 40 50 pF1KE3 MSTEAQRVDDSPSTSGGSSDGDQRESVQQEPEREQVQPKKKEGKIS-SKTAAKLSTSAKR ::: .....::.. : .:. :.: :::::.:.: ::.. ::::::: CCDS26 MSDDDSRASTSSSSSS----SSNQQTEKETNTPKKKESKVSMSKNSKLLSTSAKR 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 IQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPP ::::::.::::::::::::::::::::::::::::::::::::::::::::.:.:::::: CCDS26 IQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPP 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE3 KVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 KVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIAT 120 130 140 150 160 170 180 190 200 pF1KE3 QYMTNRAEHDRMARQWTKRYAT :::::::::::::::::::::: CCDS26 QYMTNRAEHDRMARQWTKRYAT 180 190 >>CCDS56244.1 UBE2E1 gene_id:7324|Hs108|chr3 (160 aa) initn: 985 init1: 985 opt: 985 Z-score: 1052.7 bits: 201.3 E(32554): 2.6e-52 Smith-Waterman score: 985; 97.9% identity (100.0% similar) in 143 aa overlap (59-201:18-160) 30 40 50 60 70 80 pF1KE3 QEPEREQVQPKKKEGKISSKTAAKLSTSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWR :::::::.:::::::::::::::::::::: CCDS56 MKEVGRPREVRGRPGKSRIQKELADITLDPPPNCSAGPKGDNIYEWR 10 20 30 40 90 100 110 120 130 140 pF1KE3 STILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWS ::::::::::::::::::::::.:.::::::::::::::::::::::::::::::::::: CCDS56 STILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWS 50 60 70 80 90 100 150 160 170 180 190 200 pF1KE3 PALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT ::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 PALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT 110 120 130 140 150 160 >>CCDS2639.1 UBE2E1 gene_id:7324|Hs108|chr3 (176 aa) initn: 916 init1: 869 opt: 894 Z-score: 956.0 bits: 183.6 E(32554): 6.3e-47 Smith-Waterman score: 937; 76.3% identity (84.5% similar) in 194 aa overlap (9-201:4-176) 10 20 30 40 50 pF1KE3 MSTEAQRVDDSPSTSGGSSDGDQRESVQQEPEREQVQPKKKEGKIS-SKTAAKLSTSAKR ::: .....::.. : .:. :.: :::::.:.: ::.. :::::: CCDS26 MSDDDSRASTSSSSSS----SSNQQTEKETNTPKKKESKVSMSKNSKLLSTSAK- 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 IQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPP :::::::::::::::::::::::::::::::::::.:.:::::: CCDS26 ----------------SAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPP 60 70 80 90 120 130 140 150 160 170 pF1KE3 KVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 KVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIAT 100 110 120 130 140 150 180 190 200 pF1KE3 QYMTNRAEHDRMARQWTKRYAT :::::::::::::::::::::: CCDS26 QYMTNRAEHDRMARQWTKRYAT 160 170 >>CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 (147 aa) initn: 670 init1: 670 opt: 670 Z-score: 720.3 bits: 139.7 E(32554): 8.4e-34 Smith-Waterman score: 670; 62.9% identity (85.3% similar) in 143 aa overlap (58-200:4-146) 30 40 50 60 70 80 pF1KE3 QQEPEREQVQPKKKEGKISSKTAAKLSTSAKRIQKELAEITLDPPPNCSAGPKGDNIYEW :::::::... ::: .::::: ::....: CCDS72 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHW 10 20 30 90 100 110 120 130 140 pF1KE3 RSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNW ..::.::: :.:.:::::: . : ::::::::..: :.::: ::::.: ::::::...: CCDS72 QATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQW 40 50 60 70 80 90 150 160 170 180 190 200 pF1KE3 SPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT :::::.::::::::::: : :: :::: .:: : ... ...: ::.::..:: CCDS72 SPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM 100 110 120 130 140 >>CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 (147 aa) initn: 663 init1: 663 opt: 663 Z-score: 712.9 bits: 138.3 E(32554): 2.2e-33 Smith-Waterman score: 663; 65.7% identity (83.9% similar) in 143 aa overlap (58-200:4-146) 30 40 50 60 70 80 pF1KE3 QQEPEREQVQPKKKEGKISSKTAAKLSTSAKRIQKELAEITLDPPPNCSAGPKGDNIYEW :::.::: ... ::: .::::: ::....: CCDS43 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHW 10 20 30 90 100 110 120 130 140 pF1KE3 RSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNW ..::.:: : :.:::::: : : :::::::::.: ::::: ::::.: ::::::...: CCDS43 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQW 40 50 60 70 80 90 150 160 170 180 190 200 pF1KE3 SPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT ::::::::::::::::: : :: :::: :: : :.: ...:.::.::..:: CCDS43 SPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 100 110 120 130 140 >>CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 (148 aa) initn: 663 init1: 663 opt: 663 Z-score: 712.9 bits: 138.3 E(32554): 2.2e-33 Smith-Waterman score: 663; 65.7% identity (84.6% similar) in 143 aa overlap (58-200:4-146) 30 40 50 60 70 80 pF1KE3 QQEPEREQVQPKKKEGKISSKTAAKLSTSAKRIQKELAEITLDPPPNCSAGPKGDNIYEW :::.:::.... ::: .::::: ::....: CCDS36 MALKRINKELSDLARDPPAQCSAGPVGDDMFHW 10 20 30 90 100 110 120 130 140 pF1KE3 RSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNW ..::.:: : :.:::::: : : :::::::::.: ::::: ::::.: ::::::...: CCDS36 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQW 40 50 60 70 80 90 150 160 170 180 190 200 pF1KE3 SPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT ::::::::::::::::: : :: :::: :: : :.: ...:.::.::..:: CCDS36 SPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRLAREWTEKYAML 100 110 120 130 140 >>CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 (147 aa) initn: 661 init1: 661 opt: 661 Z-score: 710.8 bits: 138.0 E(32554): 2.9e-33 Smith-Waterman score: 661; 64.3% identity (83.9% similar) in 143 aa overlap (58-200:4-146) 30 40 50 60 70 80 pF1KE3 QQEPEREQVQPKKKEGKISSKTAAKLSTSAKRIQKELAEITLDPPPNCSAGPKGDNIYEW :::::::... ::: .::::: ::....: CCDS54 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHW 10 20 30 90 100 110 120 130 140 pF1KE3 RSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNW ..::.:: : :.:::::: : : :::::::::.: :.::: ::::.: ::::::...: CCDS54 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQW 40 50 60 70 80 90 150 160 170 180 190 200 pF1KE3 SPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT :::::.::::::::::: : :: :::: :: : ..: ...:.::.::..:: CCDS54 SPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLAREWTQKYAM 100 110 120 130 140 >>CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 (147 aa) initn: 659 init1: 659 opt: 659 Z-score: 708.7 bits: 137.6 E(32554): 3.7e-33 Smith-Waterman score: 659; 65.0% identity (84.6% similar) in 143 aa overlap (58-200:4-146) 30 40 50 60 70 80 pF1KE3 QQEPEREQVQPKKKEGKISSKTAAKLSTSAKRIQKELAEITLDPPPNCSAGPKGDNIYEW :::.:::.... ::: .::::: ::....: CCDS36 MALKRINKELSDLARDPPAQCSAGPVGDDMFHW 10 20 30 90 100 110 120 130 140 pF1KE3 RSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNW ..::.:: : :.:::::: : : :::::::::.: ::::: ::::.: ::::::...: CCDS36 QATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQW 40 50 60 70 80 90 150 160 170 180 190 200 pF1KE3 SPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT ::::::::::::::::: : :: :::: :: : :.: ...:..:.::..:: CCDS36 SPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 100 110 120 130 140 201 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 07:52:26 2016 done: Sun Nov 6 07:52:27 2016 Total Scan time: 2.100 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]