Result of FASTA (ccds) for
pFN21AE6602
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE6602, 238 aa
1>>>pF1KE6602 238 - 238 aa - 238 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0376+/-0.000629; mu= 15.6456+/- 0.038
mean_var=59.4288+/-11.659, 0's: 0 Z-trim(110.0): 10 B-trim: 0 in 0/54
Lambda= 0.166370
statistics sampled from 11303 (11313) to 11303 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.348), width: 16
Scan time: 1.830
The best scores are: opt bits E(32554)
CCDS2587.1 CIDEC gene_id:63924|Hs108|chr3 ( 238) 1574 385.6 1.6e-107
CCDS74897.1 CIDEC gene_id:63924|Hs108|chr3 ( 251) 1574 385.6 1.6e-107
CCDS56239.1 CIDEC gene_id:63924|Hs108|chr3 ( 248) 1142 281.9 2.7e-76
CCDS82731.1 CIDEC gene_id:63924|Hs108|chr3 ( 164) 1111 274.4 3.3e-74
CCDS11856.1 CIDEA gene_id:1149|Hs108|chr18 ( 219) 597 151.0 5.7e-37
CCDS32056.1 CIDEB gene_id:27141|Hs108|chr14 ( 219) 545 138.6 3.3e-33
>>CCDS2587.1 CIDEC gene_id:63924|Hs108|chr3 (238 aa)
initn: 1574 init1: 1574 opt: 1574 Z-score: 2044.0 bits: 385.6 E(32554): 1.6e-107
Smith-Waterman score: 1574; 100.0% identity (100.0% similar) in 238 aa overlap (1-238:1-238)
10 20 30 40 50 60
pF1KE6 MEYAMKSLSLLYPKSLSRHVSVRTSVVTQQLLSEPSPKAPRARPCRVSTADRSVRKGIMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 MEYAMKSLSLLYPKSLSRHVSVRTSVVTQQLLSEPSPKAPRARPCRVSTADRSVRKGIMA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE6 YSLEDLLLKVRDTLMLADKPFFLVLEEDGTTVETEEYFQALAGDTVFMVLQKGQKWQPPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 YSLEDLLLKVRDTLMLADKPFFLVLEEDGTTVETEEYFQALAGDTVFMVLQKGQKWQPPS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE6 EQGTRHPLSLSHKPAKKIDVARVTFDLYKLNPQDFIGCLNVKATFYDTYSLSYDLHCCGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 EQGTRHPLSLSHKPAKKIDVARVTFDLYKLNPQDFIGCLNVKATFYDTYSLSYDLHCCGA
130 140 150 160 170 180
190 200 210 220 230
pF1KE6 KRIMKEAFRWALFSMQATGHVLLGTSCYLQQLLDATEEGQPPKGKASSLIPTCLKILQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 KRIMKEAFRWALFSMQATGHVLLGTSCYLQQLLDATEEGQPPKGKASSLIPTCLKILQ
190 200 210 220 230
>>CCDS74897.1 CIDEC gene_id:63924|Hs108|chr3 (251 aa)
initn: 1574 init1: 1574 opt: 1574 Z-score: 2043.6 bits: 385.6 E(32554): 1.6e-107
Smith-Waterman score: 1574; 100.0% identity (100.0% similar) in 238 aa overlap (1-238:14-251)
10 20 30 40
pF1KE6 MEYAMKSLSLLYPKSLSRHVSVRTSVVTQQLLSEPSPKAPRARPCRV
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MRNMESNAVQLTRMEYAMKSLSLLYPKSLSRHVSVRTSVVTQQLLSEPSPKAPRARPCRV
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE6 STADRSVRKGIMAYSLEDLLLKVRDTLMLADKPFFLVLEEDGTTVETEEYFQALAGDTVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 STADRSVRKGIMAYSLEDLLLKVRDTLMLADKPFFLVLEEDGTTVETEEYFQALAGDTVF
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE6 MVLQKGQKWQPPSEQGTRHPLSLSHKPAKKIDVARVTFDLYKLNPQDFIGCLNVKATFYD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MVLQKGQKWQPPSEQGTRHPLSLSHKPAKKIDVARVTFDLYKLNPQDFIGCLNVKATFYD
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE6 TYSLSYDLHCCGAKRIMKEAFRWALFSMQATGHVLLGTSCYLQQLLDATEEGQPPKGKAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 TYSLSYDLHCCGAKRIMKEAFRWALFSMQATGHVLLGTSCYLQQLLDATEEGQPPKGKAS
190 200 210 220 230 240
230
pF1KE6 SLIPTCLKILQ
:::::::::::
CCDS74 SLIPTCLKILQ
250
>>CCDS56239.1 CIDEC gene_id:63924|Hs108|chr3 (248 aa)
initn: 1142 init1: 1142 opt: 1142 Z-score: 1483.3 bits: 281.9 E(32554): 2.7e-76
Smith-Waterman score: 1544; 96.0% identity (96.0% similar) in 248 aa overlap (1-238:1-248)
10 20 30 40 50 60
pF1KE6 MEYAMKSLSLLYPKSLSRHVSVRTSVVTQQLLSEPSPKAPRARPCRVSTADRSVRKGIMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MEYAMKSLSLLYPKSLSRHVSVRTSVVTQQLLSEPSPKAPRARPCRVSTADRSVRKGIMA
10 20 30 40 50 60
70 80 90 100 110
pF1KE6 YSLEDLLLK----------VRDTLMLADKPFFLVLEEDGTTVETEEYFQALAGDTVFMVL
::::::::: :::::::::::::::::::::::::::::::::::::::::
CCDS56 YSLEDLLLKTRNPEARSQEVRDTLMLADKPFFLVLEEDGTTVETEEYFQALAGDTVFMVL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE6 QKGQKWQPPSEQGTRHPLSLSHKPAKKIDVARVTFDLYKLNPQDFIGCLNVKATFYDTYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 QKGQKWQPPSEQGTRHPLSLSHKPAKKIDVARVTFDLYKLNPQDFIGCLNVKATFYDTYS
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE6 LSYDLHCCGAKRIMKEAFRWALFSMQATGHVLLGTSCYLQQLLDATEEGQPPKGKASSLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LSYDLHCCGAKRIMKEAFRWALFSMQATGHVLLGTSCYLQQLLDATEEGQPPKGKASSLI
190 200 210 220 230 240
pF1KE6 PTCLKILQ
::::::::
CCDS56 PTCLKILQ
>>CCDS82731.1 CIDEC gene_id:63924|Hs108|chr3 (164 aa)
initn: 1111 init1: 1111 opt: 1111 Z-score: 1445.8 bits: 274.4 E(32554): 3.3e-74
Smith-Waterman score: 1111; 100.0% identity (100.0% similar) in 164 aa overlap (75-238:1-164)
50 60 70 80 90 100
pF1KE6 CRVSTADRSVRKGIMAYSLEDLLLKVRDTLMLADKPFFLVLEEDGTTVETEEYFQALAGD
::::::::::::::::::::::::::::::
CCDS82 MLADKPFFLVLEEDGTTVETEEYFQALAGD
10 20 30
110 120 130 140 150 160
pF1KE6 TVFMVLQKGQKWQPPSEQGTRHPLSLSHKPAKKIDVARVTFDLYKLNPQDFIGCLNVKAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TVFMVLQKGQKWQPPSEQGTRHPLSLSHKPAKKIDVARVTFDLYKLNPQDFIGCLNVKAT
40 50 60 70 80 90
170 180 190 200 210 220
pF1KE6 FYDTYSLSYDLHCCGAKRIMKEAFRWALFSMQATGHVLLGTSCYLQQLLDATEEGQPPKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 FYDTYSLSYDLHCCGAKRIMKEAFRWALFSMQATGHVLLGTSCYLQQLLDATEEGQPPKG
100 110 120 130 140 150
230
pF1KE6 KASSLIPTCLKILQ
::::::::::::::
CCDS82 KASSLIPTCLKILQ
160
>>CCDS11856.1 CIDEA gene_id:1149|Hs108|chr18 (219 aa)
initn: 595 init1: 310 opt: 597 Z-score: 777.1 bits: 151.0 E(32554): 5.7e-37
Smith-Waterman score: 597; 48.5% identity (74.2% similar) in 198 aa overlap (36-233:28-218)
10 20 30 40 50 60
pF1KE6 KSLSLLYPKSLSRHVSVRTSVVTQQLLSEPSPKAPRARPCRVSTADRSVRKGIMAYSLED
.: ::: :::. ::: :.:.:: ::..
CCDS11 MEAARDYAGALIRPLTFMGSQTKRVLFTPLMHPARPFRVSNHDRSSRRGVMASSLQE
10 20 30 40 50
70 80 90 100 110 120
pF1KE6 LLLKVRDTLMLADKPFFLVLEEDGTTVETEEYFQALAGDTVFMVLQKGQKWQPPSEQGTR
:. :. :.:..: ::::::::.:.:::.::.:. .: ::.:.:::::.: :..
CCDS11 LISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTLGDNTHFMILEKGQKWMP----GSQ
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE6 HPLSLSHKPAKKIDVARVTFDLYKLNPQDFIGCLNVKATFYDTYSLSYDLHCCGAKRIMK
: . : : :. .::::::::.:::.:::::::::::.:. ::.:::..: : : ...
CCDS11 HVPTCS--PPKRSGIARVTFDLYRLNPKDFIGCLNVKATMYEMYSVSYDIRCTGLKGLLR
120 130 140 150 160 170
190 200 210 220 230
pF1KE6 EAFRWALFSMQATGHVLLGTSCYLQQLLDATEEGQPPKGKASSLIPTCLKILQ
.:. .: :.::. :. . :. ..:: :: ...:.. . ::
CCDS11 SLLRFLSYSAQVTGQFLIYLGTYMLRVLDDKEERPSLRSQAKGRF-TCG
180 190 200 210
>>CCDS32056.1 CIDEB gene_id:27141|Hs108|chr14 (219 aa)
initn: 532 init1: 261 opt: 545 Z-score: 709.7 bits: 138.6 E(32554): 3.3e-33
Smith-Waterman score: 545; 42.2% identity (68.4% similar) in 225 aa overlap (5-228:1-218)
10 20 30 40 50
pF1KE6 MEYAMKSLSLLYPKSLSRHVSVRTSVVTQQL-LSEPSPKAPRARPCRVSTADRSVRKGIM
:. :: : :..: : :: .: ... : : :. :: :: :..:::.
CCDS32 MEYLSALNPSDLLRSVSNISSEFGRRVWTSAPPPQ----RPFRVCDHKRTIRKGLT
10 20 30 40 50
60 70 80 90 100 110
pF1KE6 AYSLEDLLLKVRDTLMLADKPFFLVLEEDGTTVETEEYFQALAGDTVFMVLQKGQKWQPP
: . ..:: :. .::.: . . ::::::::.:..:..:: : :: .::::.::.:.:
CCDS32 AATRQELLAKALETLLL-NGVLTLVLEEDGTAVDSEDFFQLLEDDTCLMVLQSGQSWSPT
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE6 SEQGTRHPLSLSHKPAKKIDVARVTFDLYKLNPQDFIGCLNVKATFYDTYSLSYDLHCCG
. :. ..: .. :.:: :::.:: ::.:..: :::::::: ::.: :.. :
CCDS32 RSGVLSYGLG-RERPKHSKDIARFTFDVYKQNPRDLFGSLNVKATFYGLYSMSCDFQGLG
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE6 AKRIMKEAFRWALFSMQATGHVLLGTSCYLQQLLDATEEGQPPKGKASSLIPTCLKILQ
:....: .::. .:. ::.::: : :.. ....:. : ::. :
CCDS32 PKKVLRELLRWTSTLLQGLGHMLLGISSTLRHAVEGAEQWQQ-KGRLHSY
180 190 200 210
238 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 14:41:13 2016 done: Tue Nov 8 14:41:13 2016
Total Scan time: 1.830 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]