FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1950, 507 aa
  1>>>pF1KE1950 507 - 507 aa - 507 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1155+/-0.00109; mu= 14.0445+/- 0.066
 mean_var=75.3177+/-14.798, 0's: 0 Z-trim(103.6): 34  B-trim: 43 in 1/49
 Lambda= 0.147783
 statistics sampled from 7481 (7487) to 7481 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.591), E-opt: 0.2 (0.23), width:  16
 Scan time:  3.150

The best scores are:                                      opt bits E(32554)
CCDS2573.1 THUMPD3 gene_id:25917|Hs108|chr3        ( 507) 3401 734.9 4.9e-212
CCDS1805.2 THUMPD2 gene_id:80745|Hs108|chr2        ( 503)  425 100.4 4.9e-21


>>CCDS2573.1 THUMPD3 gene_id:25917|Hs108|chr3             (507 aa)
 initn: 3401 init1: 3401 opt: 3401  Z-score: 3920.2  bits: 734.9 E(32554): 4.9e-212
Smith-Waterman score: 3401; 100.0% identity (100.0% similar) in 507 aa overlap (1-507:1-507)

               10        20        30        40        50        60
pF1KE1 MCDIEEATNQLLDVNLHENQKSVQVTESDLGSESELLVTIGATVPTGFEQTAADEVREKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 MCDIEEATNQLLDVNLHENQKSVQVTESDLGSESELLVTIGATVPTGFEQTAADEVREKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 GSSCKISRDRGKIYFVISVESLAQVHCLRSVDNLFVVVQEFQDYQFKQTKEEVLKDFEDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 GSSCKISRDRGKIYFVISVESLAQVHCLRSVDNLFVVVQEFQDYQFKQTKEEVLKDFEDL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 AGKLPWSNPLKVWKINASFKKKKAKRKKINQNSSKEKINNGQEVKIDQRNVKKEFTSHAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 AGKLPWSNPLKVWKINASFKKKKAKRKKINQNSSKEKINNGQEVKIDQRNVKKEFTSHAL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 DSHILDYYENPAIKEDVSTLIGDDLASCKDETDESSKEETEPQVLKFRVTCNRAGEKHCF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 DSHILDYYENPAIKEDVSTLIGDDLASCKDETDESSKEETEPQVLKFRVTCNRAGEKHCF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 TSNEAARDFGGAVQDYFKWKADMTNFDVEVLLNIHDNEVIVGIALTEESLHRRNITHFGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 TSNEAARDFGGAVQDYFKWKADMTNFDVEVLLNIHDNEVIVGIALTEESLHRRNITHFGP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 TTLRSTLAYGMLRLCDPLPYDIIVDPMCGTGAIPIEGATEWSDCFHIAGDNNPLAVNRAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 TTLRSTLAYGMLRLCDPLPYDIIVDPMCGTGAIPIEGATEWSDCFHIAGDNNPLAVNRAA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 NNIASLLTKSQIKEGKPSWGLPIDAVQWDICNLPLRTGSVDIIVTDLPFGKRMGSKKRNW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 NNIASLLTKSQIKEGKPSWGLPIDAVQWDICNLPLRTGSVDIIVTDLPFGKRMGSKKRNW
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 NLYPACLREMSRVCTPTTGRAVLLTQDTKCFTKALSGMRHVWRKVDTVWVNVGGLRAAVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 NLYPACLREMSRVCTPTTGRAVLLTQDTKCFTKALSGMRHVWRKVDTVWVNVGGLRAAVY
              430       440       450       460       470       480

              490       500       
pF1KE1 VLIRTPQAFVHPSEQDGERGTLWQCKE
       :::::::::::::::::::::::::::
CCDS25 VLIRTPQAFVHPSEQDGERGTLWQCKE
              490       500       

>>CCDS1805.2 THUMPD2 gene_id:80745|Hs108|chr2             (503 aa)
 initn: 350 init1: 155 opt: 425  Z-score: 491.2  bits: 100.4 E(32554): 4.9e-21
Smith-Waterman score: 492; 27.5% identity (60.8% similar) in 426 aa overlap (31-447:9-411)

               10        20        30        40        50        60
pF1KE1 MCDIEEATNQLLDVNLHENQKSVQVTESDLGSESELLVTIGATVPTGFEQTAADEVREKL
                                     ::  :  . .  :.  :.:  .  ::: .:
CCDS18                       MSEARGEPGSGPEAGARFFCTAGRGLEPFVMREVRARL
                                     10        20        30        

               70        80        90        100       110         
pF1KE1 GSSCKISRDRGKIYFVISVESLAQVHCLRSVDNLFVVVQ-EFQDYQFKQTKEEVLKDFED
       ... ..    ::..:. .  .: ... :.:.. ::.... .:     . .: ....... 
CCDS18 AAT-QVEYISGKVFFT-TCSDLNMLKKLKSAERLFLLIKKQFPLIISSVSKGKIFNEMQR
       40         50         60        70        80        90      

     120         130       140       150       160           170   
pF1KE1 LAGKLP--WSNPLKVWKINASFKKKKAKRKKINQNSSKEKINNGQ----EVKIDQRNVKK
       : .. :  : : ...::    .  :: : .. ..:. :.:.....    ..::.: .  .
CCDS18 LINEDPGSWLNAISIWKNLLELDAKKEKLSQRDDNQLKRKVGENEIIAKKLKIEQMQKIE
        100       110       120       130       140       150      

           180       190       200       210       220        230  
pF1KE1 EFTSHALDSHILDYYENPAIKEDVSTLIGDDLASCKDETDESSKEETEPQV-LKFRVTCN
       :  .  :...:    :.   ..: .:  .. .   . ..:  .  .:. :  : :::.: 
CCDS18 ENRDCQLEKQI---KEETLEQRDFTTK-SEKFQEEEFQNDIEKAIDTHNQNDLTFRVSCR
        160          170       180        190       200       210  

             240       250       260       270       280       290 
pF1KE1 RAGE-KHCFTSNEAARDFGGAVQDYFKWKADMTNFDVEVLLNIHDNEVIVGIALTEESLH
        .:   . ::..:... .: :.. .: ::::. : ..:......:   .::: . . :: 
CCDS18 CSGTIGKAFTAQEVGKVIGIAIMKHFGWKADLRNPQLEIFIHLNDIYSVVGIPVFRVSLA
            220       230       240       250       260       270  

             300       310       320       330       340       350 
pF1KE1 RRNITHFGPTTLRSTLAYGMLRLCDPLPYDIIVDPMCGTGAIPIEGATEWSDCFHIAGDN
        :  ...  . ::::.:..:  : :     ...::::: :.: .:.: :: : .....: 
CCDS18 SR--AYIKTAGLRSTIAWAMASLADIKAGAFVLDPMCGLGTILLEAAKEWPDVYYVGADV
              280       290       300       310       320       330

             360       370       380       390       400       410 
pF1KE1 NPLAVNRAANNIASLLTKSQIKEGKPSWGLPIDAVQWDICNLPLRTGSVDIIVTDLPFGK
       .   .  . .:.     :.   : :      :. .. .. .::: . :::::..:.::::
CCDS18 SDSQLLGTWDNL-----KAAGLEDK------IELLKISVIELPLPSESVDIIISDIPFGK
              340            350             360       370         

             420       430       440       450       460       470 
pF1KE1 RMGSKKRNWNLYPACLREMSRVCTPTTGRAVLLTQDTKCFTKALSGMRHVWRKVDTVWVN
       ..   :   ..    :.:: ::       ..::..:                        
CCDS18 KFKLGKDIKSI----LQEMERVLHVGGTIVLLLSEDHHRRLTDCKESNIPFNSKDSHTDE
     380       390           400       410       420       430     

             480       490       500                               
pF1KE1 VGGLRAAVYVLIRTPQAFVHPSEQDGERGTLWQCKE                        
                                                                   
CCDS18 PGIKKCLNPEEKTGAFKTASTSFEASNHKFLDRMSPFGSLVPVECYKVSLGKTDAFICKY
         440       450       460       470       480       490     




507 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:55:04 2016 done: Sun Nov  6 17:55:05 2016
 Total Scan time:  3.150 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]