FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3007, 87 aa 1>>>pF1KE3007 87 - 87 aa - 87 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.6687+/-0.000488; mu= 12.3672+/- 0.029 mean_var=59.1545+/-11.670, 0's: 0 Z-trim(114.9): 1 B-trim: 11 in 1/50 Lambda= 0.166756 statistics sampled from 15501 (15502) to 15501 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.837), E-opt: 0.2 (0.476), width: 16 Scan time: 1.230 The best scores are: opt bits E(32554) CCDS2519.1 PRLH gene_id:51052|Hs108|chr2 ( 87) 606 152.6 2.9e-38 >>CCDS2519.1 PRLH gene_id:51052|Hs108|chr2 (87 aa) initn: 606 init1: 606 opt: 606 Z-score: 800.5 bits: 152.6 E(32554): 2.9e-38 Smith-Waterman score: 606; 100.0% identity (100.0% similar) in 87 aa overlap (1-87:1-87) 10 20 30 40 50 60 pF1KE3 MKVLRAWLLCLLMLGLALRGAASRTHRHSMEIRTPDINPAWYASRGIRPVGRFGRRRATL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS25 MKVLRAWLLCLLMLGLALRGAASRTHRHSMEIRTPDINPAWYASRGIRPVGRFGRRRATL 10 20 30 40 50 60 70 80 pF1KE3 GDVPKPGLRPRLTCFPLEGGAMSSQDG ::::::::::::::::::::::::::: CCDS25 GDVPKPGLRPRLTCFPLEGGAMSSQDG 70 80 87 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 04:54:41 2016 done: Tue Nov 8 04:54:41 2016 Total Scan time: 1.230 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]