FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9281, 209 aa 1>>>pF1KE9281 209 - 209 aa - 209 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4200+/-0.000297; mu= 13.4271+/- 0.019 mean_var=66.0328+/-13.041, 0's: 0 Z-trim(117.9): 2 B-trim: 41 in 1/53 Lambda= 0.157832 statistics sampled from 30421 (30423) to 30421 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.725), E-opt: 0.2 (0.357), width: 16 Scan time: 4.260 The best scores are: opt bits E(85289) NP_006701 (OMIM: 616011) COP9 signalosome complex ( 209) 1397 326.2 2.4e-89 NP_937832 (OMIM: 616011) COP9 signalosome complex ( 160) 1072 252.1 3.6e-67 >>NP_006701 (OMIM: 616011) COP9 signalosome complex subu (209 aa) initn: 1397 init1: 1397 opt: 1397 Z-score: 1725.0 bits: 326.2 E(85289): 2.4e-89 Smith-Waterman score: 1397; 100.0% identity (100.0% similar) in 209 aa overlap (1-209:1-209) 10 20 30 40 50 60 pF1KE9 MPVAVMAESAFSFKKLLDQCENQELEAPGGIATPPVYGQLLALYLLHNDMNNARYLWKRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 MPVAVMAESAFSFKKLLDQCENQELEAPGGIATPPVYGQLLALYLLHNDMNNARYLWKRI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 PPAIKSANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 PPAIKSANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFAL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 VSQAYTSIIADDFAAFVGLPVEEAVKGILEQGWQADSTTRMVLPRKPVAGALDVSFNKFI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 VSQAYTSIIADDFAAFVGLPVEEAVKGILEQGWQADSTTRMVLPRKPVAGALDVSFNKFI 130 140 150 160 170 180 190 200 pF1KE9 PLSEPAPVPPIPNEQQLARLTDYVAFLEN ::::::::::::::::::::::::::::: NP_006 PLSEPAPVPPIPNEQQLARLTDYVAFLEN 190 200 >>NP_937832 (OMIM: 616011) COP9 signalosome complex subu (160 aa) initn: 1072 init1: 1072 opt: 1072 Z-score: 1326.9 bits: 252.1 E(85289): 3.6e-67 Smith-Waterman score: 1072; 100.0% identity (100.0% similar) in 160 aa overlap (50-209:1-160) 20 30 40 50 60 70 pF1KE9 CENQELEAPGGIATPPVYGQLLALYLLHNDMNNARYLWKRIPPAIKSANSELGGIWSVGQ :::::::::::::::::::::::::::::: NP_937 MNNARYLWKRIPPAIKSANSELGGIWSVGQ 10 20 30 80 90 100 110 120 130 pF1KE9 RIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFALVSQAYTSIIADDFAAFVGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_937 RIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFALVSQAYTSIIADDFAAFVGL 40 50 60 70 80 90 140 150 160 170 180 190 pF1KE9 PVEEAVKGILEQGWQADSTTRMVLPRKPVAGALDVSFNKFIPLSEPAPVPPIPNEQQLAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_937 PVEEAVKGILEQGWQADSTTRMVLPRKPVAGALDVSFNKFIPLSEPAPVPPIPNEQQLAR 100 110 120 130 140 150 200 pF1KE9 LTDYVAFLEN :::::::::: NP_937 LTDYVAFLEN 160 209 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 10:18:14 2016 done: Tue Nov 8 10:18:15 2016 Total Scan time: 4.260 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]