FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE9281, 209 aa
  1>>>pF1KE9281 209 - 209 aa - 209 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4573+/-0.000673; mu= 13.2751+/- 0.041
 mean_var=67.6061+/-13.245, 0's: 0 Z-trim(110.8): 4  B-trim: 0 in 0/52
 Lambda= 0.155984
 statistics sampled from 11863 (11865) to 11863 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.364), width:  16
 Scan time:  1.480

The best scores are:                                      opt bits E(32554)
CCDS2517.1 COPS8 gene_id:10920|Hs108|chr2          ( 209) 1397 322.5 1.2e-88
CCDS42835.1 COPS8 gene_id:10920|Hs108|chr2         ( 160) 1072 249.3 9.5e-67


>>CCDS2517.1 COPS8 gene_id:10920|Hs108|chr2               (209 aa)
 initn: 1397 init1: 1397 opt: 1397  Z-score: 1705.3  bits: 322.5 E(32554): 1.2e-88
Smith-Waterman score: 1397; 100.0% identity (100.0% similar) in 209 aa overlap (1-209:1-209)

               10        20        30        40        50        60
pF1KE9 MPVAVMAESAFSFKKLLDQCENQELEAPGGIATPPVYGQLLALYLLHNDMNNARYLWKRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 MPVAVMAESAFSFKKLLDQCENQELEAPGGIATPPVYGQLLALYLLHNDMNNARYLWKRI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE9 PPAIKSANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 PPAIKSANSELGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFAL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE9 VSQAYTSIIADDFAAFVGLPVEEAVKGILEQGWQADSTTRMVLPRKPVAGALDVSFNKFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 VSQAYTSIIADDFAAFVGLPVEEAVKGILEQGWQADSTTRMVLPRKPVAGALDVSFNKFI
              130       140       150       160       170       180

              190       200         
pF1KE9 PLSEPAPVPPIPNEQQLARLTDYVAFLEN
       :::::::::::::::::::::::::::::
CCDS25 PLSEPAPVPPIPNEQQLARLTDYVAFLEN
              190       200         

>>CCDS42835.1 COPS8 gene_id:10920|Hs108|chr2              (160 aa)
 initn: 1072 init1: 1072 opt: 1072  Z-score: 1311.8  bits: 249.3 E(32554): 9.5e-67
Smith-Waterman score: 1072; 100.0% identity (100.0% similar) in 160 aa overlap (50-209:1-160)

      20        30        40        50        60        70         
pF1KE9 CENQELEAPGGIATPPVYGQLLALYLLHNDMNNARYLWKRIPPAIKSANSELGGIWSVGQ
                                     ::::::::::::::::::::::::::::::
CCDS42                               MNNARYLWKRIPPAIKSANSELGGIWSVGQ
                                             10        20        30

      80        90       100       110       120       130         
pF1KE9 RIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFALVSQAYTSIIADDFAAFVGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFALVSQAYTSIIADDFAAFVGL
               40        50        60        70        80        90

     140       150       160       170       180       190         
pF1KE9 PVEEAVKGILEQGWQADSTTRMVLPRKPVAGALDVSFNKFIPLSEPAPVPPIPNEQQLAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PVEEAVKGILEQGWQADSTTRMVLPRKPVAGALDVSFNKFIPLSEPAPVPPIPNEQQLAR
              100       110       120       130       140       150

     200         
pF1KE9 LTDYVAFLEN
       ::::::::::
CCDS42 LTDYVAFLEN
              160




209 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:18:14 2016 done: Tue Nov  8 10:18:14 2016
 Total Scan time:  1.480 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]