FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8519, 953 aa 1>>>pF1KB8519 953 - 953 aa - 953 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.3249+/-0.00109; mu= 7.0952+/- 0.066 mean_var=146.2325+/-28.402, 0's: 0 Z-trim(107.5): 19 B-trim: 5 in 1/52 Lambda= 0.106060 statistics sampled from 9585 (9594) to 9585 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.634), E-opt: 0.2 (0.295), width: 16 Scan time: 4.170 The best scores are: opt bits E(32554) CCDS2482.1 PSMD1 gene_id:5707|Hs108|chr2 ( 953) 6227 965.4 0 CCDS54436.1 PSMD1 gene_id:5707|Hs108|chr2 ( 922) 5220 811.3 0 >>CCDS2482.1 PSMD1 gene_id:5707|Hs108|chr2 (953 aa) initn: 6227 init1: 6227 opt: 6227 Z-score: 5155.8 bits: 965.4 E(32554): 0 Smith-Waterman score: 6227; 100.0% identity (100.0% similar) in 953 aa overlap (1-953:1-953) 10 20 30 40 50 60 pF1KB8 MITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS24 MITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS24 ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS24 GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 LKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS24 LKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKED 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB8 NLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDSDSMETE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS24 NLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDSDSMETE 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB8 EKTSSAFVGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS24 EKTSSAFVGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB8 RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS24 RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB8 QLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHGGSLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS24 QLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHGGSLG 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB8 LGLAAMGTARQDVYDLLKTNLYQDDAVTGEAAGLALGLVMLGSKNAQAIEDMVGYAQETQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS24 LGLAAMGTARQDVYDLLKTNLYQDDAVTGEAAGLALGLVMLGSKNAQAIEDMVGYAQETQ 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB8 HEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS24 HEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIR 550 560 570 580 590 600 610 620 630 640 650 660 pF1KB8 RLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS24 RLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICC 610 620 630 640 650 660 670 680 690 700 710 720 pF1KB8 AGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEITCPKVNQFRQLYSKVINDK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS24 AGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEITCPKVNQFRQLYSKVINDK 670 680 690 700 710 720 730 740 750 760 770 780 pF1KB8 HDDVMAKFGAILAQGILDAGGHNVTISLQSRTGHTHMPSVVGVLVFTQFWFWFPLSHFLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS24 HDDVMAKFGAILAQGILDAGGHNVTISLQSRTGHTHMPSVVGVLVFTQFWFWFPLSHFLS 730 740 750 760 770 780 790 800 810 820 830 840 pF1KB8 LAYTPTCVIGLNKDLKMPKVQYKSNCKPSTFAYPAPLEVPKEKEKEKVSTAVLSITAKAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS24 LAYTPTCVIGLNKDLKMPKVQYKSNCKPSTFAYPAPLEVPKEKEKEKVSTAVLSITAKAK 790 800 810 820 830 840 850 860 870 880 890 900 pF1KB8 KKEKEKEKKEEEKMEVDEAEKKEEKEKKKEPEPNFQLLDNPARVMPAQLKVLTMPETCRY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS24 KKEKEKEKKEEEKMEVDEAEKKEEKEKKKEPEPNFQLLDNPARVMPAQLKVLTMPETCRY 850 860 870 880 890 900 910 920 930 940 950 pF1KB8 QPFKPLSIGGIIILKDTSEDIEELVEPVAAHGPKIEEEEQEPEPPEPFEYIDD ::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS24 QPFKPLSIGGIIILKDTSEDIEELVEPVAAHGPKIEEEEQEPEPPEPFEYIDD 910 920 930 940 950 >>CCDS54436.1 PSMD1 gene_id:5707|Hs108|chr2 (922 aa) initn: 5436 init1: 5196 opt: 5220 Z-score: 4323.3 bits: 811.3 E(32554): 0 Smith-Waterman score: 5941; 96.7% identity (96.7% similar) in 953 aa overlap (1-953:1-922) 10 20 30 40 50 60 pF1KB8 MITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 MITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 LKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 LKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKED 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB8 NLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDSDSMETE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 NLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDSDSMETE 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB8 EKTSSAFVGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 EKTSSAFVGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB8 RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB8 QLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHGGSLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 QLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHGGSLG 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB8 LGLAAMGTARQDVYDLLKTNLYQDDAVTGEAAGLALGLVMLGSKNAQAIEDMVGYAQETQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 LGLAAMGTARQDVYDLLKTNLYQDDAVTGEAAGLALGLVMLGSKNAQAIEDMVGYAQETQ 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB8 HEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 HEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIR 550 560 570 580 590 600 610 620 630 640 650 660 pF1KB8 RLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 RLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICC 610 620 630 640 650 660 670 680 690 700 710 720 pF1KB8 AGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEITCPKVNQFRQLYSKVINDK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 AGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEITCPKVNQFRQLYSKVINDK 670 680 690 700 710 720 730 740 750 760 770 780 pF1KB8 HDDVMAKFGAILAQGILDAGGHNVTISLQSRTGHTHMPSVVGVLVFTQFWFWFPLSHFLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 HDDVMAKFGAILAQGILDAGGHNVTISLQSRTGHTHMPSVVGVLVFTQFWFWFPLSHFLS 730 740 750 760 770 780 790 800 810 820 830 840 pF1KB8 LAYTPTCVIGLNKDLKMPKVQYKSNCKPSTFAYPAPLEVPKEKEKEKVSTAVLSITAKAK :::::::::::::::: ::::::::::::: CCDS54 LAYTPTCVIGLNKDLK-------------------------------VSTAVLSITAKAK 790 800 850 860 870 880 890 900 pF1KB8 KKEKEKEKKEEEKMEVDEAEKKEEKEKKKEPEPNFQLLDNPARVMPAQLKVLTMPETCRY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 KKEKEKEKKEEEKMEVDEAEKKEEKEKKKEPEPNFQLLDNPARVMPAQLKVLTMPETCRY 810 820 830 840 850 860 910 920 930 940 950 pF1KB8 QPFKPLSIGGIIILKDTSEDIEELVEPVAAHGPKIEEEEQEPEPPEPFEYIDD ::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 QPFKPLSIGGIIILKDTSEDIEELVEPVAAHGPKIEEEEQEPEPPEPFEYIDD 870 880 890 900 910 920 953 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 17:58:15 2016 done: Sun Nov 6 17:58:15 2016 Total Scan time: 4.170 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]