FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1825, 341 aa 1>>>pF1KE1825 341 - 341 aa - 341 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6830+/-0.0011; mu= 14.8686+/- 0.067 mean_var=73.5368+/-14.653, 0's: 0 Z-trim(102.2): 20 B-trim: 47 in 1/50 Lambda= 0.149562 statistics sampled from 6850 (6854) to 6850 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.562), E-opt: 0.2 (0.211), width: 16 Scan time: 2.520 The best scores are: opt bits E(32554) CCDS2478.1 CAB39 gene_id:51719|Hs108|chr2 ( 341) 2193 482.7 1.8e-136 CCDS9416.2 CAB39L gene_id:81617|Hs108|chr13 ( 337) 1748 386.7 1.4e-107 >>CCDS2478.1 CAB39 gene_id:51719|Hs108|chr2 (341 aa) initn: 2193 init1: 2193 opt: 2193 Z-score: 2563.5 bits: 482.7 E(32554): 1.8e-136 Smith-Waterman score: 2193; 100.0% identity (100.0% similar) in 341 aa overlap (1-341:1-341) 10 20 30 40 50 60 pF1KE1 MPFPFGKSHKSPADIVKNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS24 MPFPFGKSHKSPADIVKNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGTNEK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 EPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS24 EPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 CTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS24 CTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 ASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS24 ASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDR 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 HNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS24 HNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQA 250 260 270 280 290 300 310 320 330 340 pF1KE1 KLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLKRPAQQEA ::::::::::::::::::::::::::::::::::::::::: CCDS24 KLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLKRPAQQEA 310 320 330 340 >>CCDS9416.2 CAB39L gene_id:81617|Hs108|chr13 (337 aa) initn: 1781 init1: 1642 opt: 1748 Z-score: 2044.6 bits: 386.7 E(32554): 1.4e-107 Smith-Waterman score: 1748; 81.0% identity (94.1% similar) in 337 aa overlap (1-337:4-336) 10 20 30 40 50 pF1KE1 MPFPFGKSHKSPADIVKNLKESMAVLEKQDISDKKAEKATEEVSKNLVAMKEILYGT ::. :.::::.::.::: ::...:.::::: ::..::.:::::.: :::::: :: CCDS94 MKKMPL-FSKSHKNPAEIVKILKDNLAILEKQD---KKTDKASEEVSKSLQAMKEILCGT 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 NEKEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTV ::::: ::::::::::::.:::: ::.::::::::::::::.::::::::::::::.::: CCDS94 NEKEPPTEAVAQLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTV 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 EYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMST ::: .. .::::::::::.:.::: :::::::::::::::::::.:.:: :::.:::.:: CCDS94 EYISAHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELST 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 FDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELL :::::::::::::::::::.: :.::::.:: .: .:::::.:::::::::::::::::. CCDS94 FDIASDAFATFKDLLTRHKVLVADFLEQNYDTIFEDYEKLLQSENYVTKRQSLKLLGELI 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE1 LDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLK ::::::.::::::::::::::::::::::: :::::::::::::::.:.:::::..:::: CCDS94 LDRHNFAIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVASPHKTQPIVEILLK 240 250 260 270 280 290 300 310 320 330 340 pF1KE1 NQAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDLKRPAQQEA :: :::::::.::..::.:::: :::.::.:::::::. : CCDS94 NQPKLIEFLSSFQKERTDDEQFADEKNYLIKQIRDLKKTAP 300 310 320 330 341 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 17:58:57 2016 done: Sun Nov 6 17:58:58 2016 Total Scan time: 2.520 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]