FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4013, 188 aa 1>>>pF1KE4013 188 - 188 aa - 188 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1720+/-0.000291; mu= 13.2105+/- 0.018 mean_var=63.2863+/-13.088, 0's: 0 Z-trim(118.3): 43 B-trim: 932 in 2/53 Lambda= 0.161220 statistics sampled from 30986 (31040) to 30986 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.754), E-opt: 0.2 (0.364), width: 16 Scan time: 5.980 The best scores are: opt bits E(85289) NP_777559 (OMIM: 609105) F-box only protein 36 [Ho ( 188) 1270 303.4 1.4e-82 XP_005246374 (OMIM: 609105) PREDICTED: F-box only ( 163) 1051 252.4 2.6e-67 >>NP_777559 (OMIM: 609105) F-box only protein 36 [Homo s (188 aa) initn: 1270 init1: 1270 opt: 1270 Z-score: 1603.7 bits: 303.4 E(85289): 1.4e-82 Smith-Waterman score: 1270; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188) 10 20 30 40 50 60 pF1KE4 MASWLPETLFETVGQGPPPSKDYYQLLVTRSQVIFRWWKISLRSEYRSTKPGEAKETHED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_777 MASWLPETLFETVGQGPPPSKDYYQLLVTRSQVIFRWWKISLRSEYRSTKPGEAKETHED 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 FLENSHLQGQTALIFGARILDYVINLCKGKFDFLERLSDDLLLTIISYLDLEDIARLCQT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_777 FLENSHLQGQTALIFGARILDYVINLCKGKFDFLERLSDDLLLTIISYLDLEDIARLCQT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 SHRFAKLCMSDKLWEQIVQSTCDTITPDVRALAEDTGWRQLFFTNKLQLQRQLRKRKQKY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_777 SHRFAKLCMSDKLWEQIVQSTCDTITPDVRALAEDTGWRQLFFTNKLQLQRQLRKRKQKY 130 140 150 160 170 180 pF1KE4 GNLREKQP :::::::: NP_777 GNLREKQP >>XP_005246374 (OMIM: 609105) PREDICTED: F-box only prot (163 aa) initn: 1051 init1: 1051 opt: 1051 Z-score: 1329.3 bits: 252.4 E(85289): 2.6e-67 Smith-Waterman score: 1051; 99.4% identity (100.0% similar) in 157 aa overlap (32-188:7-163) 10 20 30 40 50 60 pF1KE4 ASWLPETLFETVGQGPPPSKDYYQLLVTRSQVIFRWWKISLRSEYRSTKPGEAKETHEDF .::::::::::::::::::::::::::::: XP_005 MFQGLYEVIFRWWKISLRSEYRSTKPGEAKETHEDF 10 20 30 70 80 90 100 110 120 pF1KE4 LENSHLQGQTALIFGARILDYVINLCKGKFDFLERLSDDLLLTIISYLDLEDIARLCQTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LENSHLQGQTALIFGARILDYVINLCKGKFDFLERLSDDLLLTIISYLDLEDIARLCQTS 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE4 HRFAKLCMSDKLWEQIVQSTCDTITPDVRALAEDTGWRQLFFTNKLQLQRQLRKRKQKYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 HRFAKLCMSDKLWEQIVQSTCDTITPDVRALAEDTGWRQLFFTNKLQLQRQLRKRKQKYG 100 110 120 130 140 150 pF1KE4 NLREKQP ::::::: XP_005 NLREKQP 160 188 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 04:23:40 2016 done: Sun Nov 6 04:23:40 2016 Total Scan time: 5.980 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]