FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4013, 188 aa
  1>>>pF1KE4013 188 - 188 aa - 188 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1212+/-0.00059; mu= 13.5884+/- 0.036
 mean_var=58.9792+/-12.100, 0's: 0 Z-trim(111.2): 29  B-trim: 5 in 2/50
 Lambda= 0.167003
 statistics sampled from 12194 (12217) to 12194 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.767), E-opt: 0.2 (0.375), width:  16
 Scan time:  2.090

The best scores are:                                      opt bits E(32554)
CCDS2472.1 FBXO36 gene_id:130888|Hs108|chr2        ( 188) 1270 313.6 4.5e-86


>>CCDS2472.1 FBXO36 gene_id:130888|Hs108|chr2             (188 aa)
 initn: 1270 init1: 1270 opt: 1270  Z-score: 1658.7  bits: 313.6 E(32554): 4.5e-86
Smith-Waterman score: 1270; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KE4 MASWLPETLFETVGQGPPPSKDYYQLLVTRSQVIFRWWKISLRSEYRSTKPGEAKETHED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 MASWLPETLFETVGQGPPPSKDYYQLLVTRSQVIFRWWKISLRSEYRSTKPGEAKETHED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 FLENSHLQGQTALIFGARILDYVINLCKGKFDFLERLSDDLLLTIISYLDLEDIARLCQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 FLENSHLQGQTALIFGARILDYVINLCKGKFDFLERLSDDLLLTIISYLDLEDIARLCQT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 SHRFAKLCMSDKLWEQIVQSTCDTITPDVRALAEDTGWRQLFFTNKLQLQRQLRKRKQKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 SHRFAKLCMSDKLWEQIVQSTCDTITPDVRALAEDTGWRQLFFTNKLQLQRQLRKRKQKY
              130       140       150       160       170       180

               
pF1KE4 GNLREKQP
       ::::::::
CCDS24 GNLREKQP
               




188 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:23:39 2016 done: Sun Nov  6 04:23:39 2016
 Total Scan time:  2.090 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]