FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2613, 410 aa
  1>>>pF1KE2613 410 - 410 aa - 410 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.4928+/-0.000785; mu= 3.9610+/- 0.048
 mean_var=195.4782+/-38.866, 0's: 0 Z-trim(115.5): 3  B-trim: 0 in 0/54
 Lambda= 0.091733
 statistics sampled from 16017 (16020) to 16017 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.797), E-opt: 0.2 (0.492), width:  16
 Scan time:  2.600

The best scores are:                                      opt bits E(32554)
CCDS2433.1 CNPPD1 gene_id:27013|Hs108|chr2         ( 410) 2843 388.2 7.7e-108


>>CCDS2433.1 CNPPD1 gene_id:27013|Hs108|chr2              (410 aa)
 initn: 2843 init1: 2843 opt: 2843  Z-score: 2049.6  bits: 388.2 E(32554): 7.7e-108
Smith-Waterman score: 2843; 99.3% identity (99.3% similar) in 410 aa overlap (1-410:1-410)

               10        20        30        40        50        60
pF1KE2 MDLTGLLLDEEGTFSLAGFQDFTFLPGHQKLSARIRRRLYYGWDWEADCSLEELSSPVAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 MDLTGLLLDEEGTFSLAGFQDFTFLPGHQKLSARIRRRLYYGWDWEADCSLEELSSPVAD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 IAVELLQKAAPSPIRRLQKKYVAHVSREACISPCAMMLALVYIERLRHRNPDYLQHVSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 IAVELLQKAAPSPIRRLQKKYVAHVSREACISPCAMMLALVYIERLRHRNPDYLQHVSSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 DLFLISMMVASKYLYDEGEEEEVFNDEWGAAGGVAVPTLNALERGFLSAMDWHLYTDPRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 DLFLISMMVASKYLYDEGEEEEVFNDEWGAAGGVAVPTLNALERGFLSAMDWHLYTDPRE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 IFEVLSWLESCVAEQQGRWRGWYTYTDLCVLLEQPTWQLALGSLCQRLVKLSCLLAVAYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 IFEVLSWLESCVAEQQGRWRGWYTYTDLCVLLEQPTWQLALGSLCQRLVKLSCLLAVAYV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 SSVALAVASVAVIHQSLGLSCTPTPGPPDLGLTSRCLLEPCIPSVPQCLPSPANVSSCLE
       ::::::::::::::::::::: ::::::::::::::::::::::::::::: ::::::::
CCDS24 SSVALAVASVAVIHQSLGLSCIPTPGPPDLGLTSRCLLEPCIPSVPQCLPSLANVSSCLE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 GSMGLRSLWGSLLASLTPPPLPPPDPPAPPTLLHNCHLCQKLQRDSPTCHACLHPNRTVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 GSMGLRSLWGSLLASLTPPPLPPPDPPAPPTLLHNCHLCQKLQRDSPTCHACLHPNRTVP
              310       320       330       340       350       360

              370       380       390       400       410
pF1KE2 TALSSPWYHTYGLAPPWPWSPVPLSLPQPQQCSLFSVMELARLKSFVFPG
       :::::::::::::::::::::: :::::::::::::::::::::::::::
CCDS24 TALSSPWYHTYGLAPPWPWSPVLLSLPQPQQCSLFSVMELARLKSFVFPG
              370       380       390       400       410




410 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 17:07:25 2016 done: Tue Nov  8 17:07:26 2016
 Total Scan time:  2.600 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]