FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3151, 367 aa 1>>>pF1KE3151 367 - 367 aa - 367 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 11.2572+/-0.00094; mu= -7.4557+/- 0.057 mean_var=396.7989+/-79.696, 0's: 0 Z-trim(117.6): 5 B-trim: 0 in 0/55 Lambda= 0.064386 statistics sampled from 18408 (18411) to 18408 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.827), E-opt: 0.2 (0.566), width: 16 Scan time: 3.240 The best scores are: opt bits E(32554) CCDS2427.1 CDK5R2 gene_id:8941|Hs108|chr2 ( 367) 2534 248.6 6.4e-66 CCDS11273.1 CDK5R1 gene_id:8851|Hs108|chr17 ( 307) 820 89.3 4.8e-18 >>CCDS2427.1 CDK5R2 gene_id:8941|Hs108|chr2 (367 aa) initn: 2534 init1: 2534 opt: 2534 Z-score: 1296.9 bits: 248.6 E(32554): 6.4e-66 Smith-Waterman score: 2534; 100.0% identity (100.0% similar) in 367 aa overlap (1-367:1-367) 10 20 30 40 50 60 pF1KE3 MGTVLSLSPASSAKGRRPGGLPEEKKKAPPAGDEALGGYGAPPVGKGGKGESRLKRPSVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS24 MGTVLSLSPASSAKGRRPGGLPEEKKKAPPAGDEALGGYGAPPVGKGGKGESRLKRPSVL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 ISALTWKRLVAASAKKKKGSKKVTPKPASTGPDPLVQQRNRENLLRKGRDPPDGGGTAKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS24 ISALTWKRLVAASAKKKKGSKKVTPKPASTGPDPLVQQRNRENLLRKGRDPPDGGGTAKP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 LAVPVPTVPAAAATCEPPSGGSAAAQPPGSGGGKPPPPPPPAPQVAPPVPGGSPRRVIVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS24 LAVPVPTVPAAAATCEPPSGGSAAAQPPGSGGGKPPPPPPPAPQVAPPVPGGSPRRVIVQ 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 ASTGELLRCLGDFVCRRCYRLKELSPGELVGWFRGVDRSLLLQGWQDQAFITPANLVFVY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS24 ASTGELLRCLGDFVCRRCYRLKELSPGELVGWFRGVDRSLLLQGWQDQAFITPANLVFVY 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 LLCRESLRGDELASAAELQAAFLTCLYLAYSYMGNEISYPLKPFLVEPDKERFWQRCLRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS24 LLCRESLRGDELASAAELQAAFLTCLYLAYSYMGNEISYPLKPFLVEPDKERFWQRCLRL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 IQRLSPQMLRLNADPHFFTQVFQDLKNEGEAAASGGGPPSGGAPAASSAARDSCAAGTKH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS24 IQRLSPQMLRLNADPHFFTQVFQDLKNEGEAAASGGGPPSGGAPAASSAARDSCAAGTKH 310 320 330 340 350 360 pF1KE3 WTMNLDR ::::::: CCDS24 WTMNLDR >>CCDS11273.1 CDK5R1 gene_id:8851|Hs108|chr17 (307 aa) initn: 959 init1: 419 opt: 820 Z-score: 437.5 bits: 89.3 E(32554): 4.8e-18 Smith-Waterman score: 956; 52.7% identity (73.2% similar) in 328 aa overlap (1-328:1-292) 10 20 30 40 50 60 pF1KE3 MGTVLSLSPASSAKGRRPGGLPEEKKKAPPAGDEALGGYGAPPVGKGGKGESRLKRPSVL :::::::::. : . : :. : ..: : : .:..: .. ::: :. CCDS11 MGTVLSLSPS-----YRKATLFED-------GAATVGHYTAVQNSKNAK-DKNLKRHSI- 10 20 30 40 70 80 90 100 110 120 pF1KE3 ISALTWKRLVAASAKKKKGSKKVTPKPASTGPDPLVQQRNRENLLRKGRDPPDGGGTAKP ::.: :::.::.:::::. :::: .: :. . . . : ::: .:. . . . :.: CCDS11 ISVLPWKRIVAVSAKKKN-SKKV--QPNSSYQNN-ITHLNNENL-KKSLSCANLSTFAQP 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE3 LAVPVPTVPAAAATCEPPSGGSAAAQPPGSGGGKPPPPPPPAPQVAPPVPGGSPRRVIVQ : :. : : ::.. ...: ::.. : : : . .:.:.::::: CCDS11 ---P-PAQPPA-----PPASQLSGSQTGGSSSVKKAPHPAVTS-------AGTPKRVIVQ 110 120 130 140 190 200 210 220 230 240 pF1KE3 ASTGELLRCLGDFVCRRCYRLKELSPGELVGWFRGVDRSLLLQGWQDQAFITPANLVFVY :::.:::::::.:.::::::::.::: . : :.:.:::::::::::::.::::::.::.: CCDS11 ASTSELLRCLGEFLCRRCYRLKHLSPTDPVLWLRSVDRSLLLQGWQDQGFITPANVVFLY 150 160 170 180 190 200 250 260 270 280 290 300 pF1KE3 LLCRESLRGDELASAAELQAAFLTCLYLAYSYMGNEISYPLKPFLVEPDKERFWQRCLRL .:::. . ..:..: ::::..::::::.:::::::::::::::::: :: ::.::: . CCDS11 MLCRDVI-SSEVGSDHELQAVLLTCLYLSYSYMGNEISYPLKPFLVESCKEAFWDRCLSV 210 220 230 240 250 260 310 320 330 340 350 360 pF1KE3 IQRLSPQMLRLNADPHFFTQVFQDLKNEGEAAASGGGPPSGGAPAASSAARDSCAAGTKH :. .: .::..:::::.:::::.::::: CCDS11 INLMSSKMLQINADPHYFTQVFSDLKNESGQEDKKRLLLGLDR 270 280 290 300 367 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 18:01:40 2016 done: Sun Nov 6 18:01:40 2016 Total Scan time: 3.240 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]