FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5243, 204 aa 1>>>pF1KE5243 204 - 204 aa - 204 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5783+/-0.000376; mu= 12.3648+/- 0.023 mean_var=76.5504+/-15.468, 0's: 0 Z-trim(114.7): 14 B-trim: 580 in 1/52 Lambda= 0.146589 statistics sampled from 24644 (24656) to 24644 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.289), width: 16 Scan time: 4.270 The best scores are: opt bits E(85289) NP_001026886 (OMIM: 612103) SOSS complex subunit B ( 204) 1378 300.5 1.2e-81 NP_001241665 (OMIM: 612103) SOSS complex subunit B ( 124) 856 190.0 1.4e-48 XP_005269205 (OMIM: 612104) PREDICTED: SOSS comple ( 211) 718 160.9 1.3e-39 NP_076973 (OMIM: 612104) SOSS complex subunit B1 [ ( 211) 718 160.9 1.3e-39 XP_005269206 (OMIM: 612104) PREDICTED: SOSS comple ( 211) 718 160.9 1.3e-39 XP_005269204 (OMIM: 612104) PREDICTED: SOSS comple ( 227) 718 161.0 1.4e-39 XP_005269203 (OMIM: 612104) PREDICTED: SOSS comple ( 254) 718 161.0 1.5e-39 XP_016860211 (OMIM: 612103) PREDICTED: SOSS comple ( 134) 671 150.9 8.9e-37 >>NP_001026886 (OMIM: 612103) SOSS complex subunit B2 is (204 aa) initn: 1378 init1: 1378 opt: 1378 Z-score: 1586.6 bits: 300.5 E(85289): 1.2e-81 Smith-Waterman score: 1378; 99.5% identity (100.0% similar) in 204 aa overlap (1-204:1-204) 10 20 30 40 50 60 pF1KE5 MNRVNDPLIFIRDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MNRVNDPLIFIRDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 EIGGLIQPGDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDYR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EIGGLIQPGDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDYR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 GQQNKGAQSEQKNNSMNSNMGTGTFGPVGNGVHTGPESREHQFSHAGRSNGRGLINPQLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GQQNKGAQSEQKNNSMNSNMGTGTFGPVGNGVHTGPESREHQFSHAGRSNGRGLINPQLQ 130 140 150 160 170 180 190 200 pF1KE5 GTASNQTVMTTISNGRDPRRAFNR ::::::::::::::::::::::.: NP_001 GTASNQTVMTTISNGRDPRRAFKR 190 200 >>NP_001241665 (OMIM: 612103) SOSS complex subunit B2 is (124 aa) initn: 869 init1: 856 opt: 856 Z-score: 993.2 bits: 190.0 E(85289): 1.4e-48 Smith-Waterman score: 856; 99.2% identity (100.0% similar) in 124 aa overlap (81-204:1-124) 60 70 80 90 100 110 pF1KE5 TGSITISVWDEIGGLIQPGDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVP :::::::::::::::::::::::::::::: NP_001 MWKGCLTLYTGRGGELQKIGEFCMVYSEVP 10 20 30 120 130 140 150 160 170 pF1KE5 NFSEPNPDYRGQQNKGAQSEQKNNSMNSNMGTGTFGPVGNGVHTGPESREHQFSHAGRSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NFSEPNPDYRGQQNKGAQSEQKNNSMNSNMGTGTFGPVGNGVHTGPESREHQFSHAGRSN 40 50 60 70 80 90 180 190 200 pF1KE5 GRGLINPQLQGTASNQTVMTTISNGRDPRRAFNR ::::::::::::::::::::::::::::::::.: NP_001 GRGLINPQLQGTASNQTVMTTISNGRDPRRAFKR 100 110 120 >>XP_005269205 (OMIM: 612104) PREDICTED: SOSS complex su (211 aa) initn: 773 init1: 700 opt: 718 Z-score: 832.1 bits: 160.9 E(85289): 1.3e-39 Smith-Waterman score: 734; 56.7% identity (76.4% similar) in 208 aa overlap (10-204:6-211) 10 20 30 40 50 60 pF1KE5 MNRVNDPLIFIRDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWD :..::::::::::..::::: :::::::::::::.::::::::::.::::: XP_005 MTTETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWD 10 20 30 40 50 70 80 90 100 110 120 pF1KE5 EIGGLIQPGDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDYR ..:.:::::::::::.::::..::::::::::::.::::::::::::::::::::::.: XP_005 DVGNLIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYS 60 70 80 90 100 110 130 140 150 160 pF1KE5 GQQ--NKGAQSEQKNNSMNSNMGTGTFGPV-----GNGVHTGP-----ESREHQFSHAGR :: ::..:.... .. . . : .. .:. :::. . : : :: XP_005 TQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPSHPPS 120 130 140 150 160 170 170 180 190 200 pF1KE5 SN-GRGLINPQLQGTASNQTVMTTISNGRDPRRAFNR . :. : : . .. . .:::.. ::. .: XP_005 TRITRSQPNHTPAGPPGPSS--NPVSNGKETRRSSKR 180 190 200 210 >>NP_076973 (OMIM: 612104) SOSS complex subunit B1 [Homo (211 aa) initn: 773 init1: 700 opt: 718 Z-score: 832.1 bits: 160.9 E(85289): 1.3e-39 Smith-Waterman score: 734; 56.7% identity (76.4% similar) in 208 aa overlap (10-204:6-211) 10 20 30 40 50 60 pF1KE5 MNRVNDPLIFIRDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWD :..::::::::::..::::: :::::::::::::.::::::::::.::::: NP_076 MTTETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWD 10 20 30 40 50 70 80 90 100 110 120 pF1KE5 EIGGLIQPGDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDYR ..:.:::::::::::.::::..::::::::::::.::::::::::::::::::::::.: NP_076 DVGNLIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYS 60 70 80 90 100 110 130 140 150 160 pF1KE5 GQQ--NKGAQSEQKNNSMNSNMGTGTFGPV-----GNGVHTGP-----ESREHQFSHAGR :: ::..:.... .. . . : .. .:. :::. . : : :: NP_076 TQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPSHPPS 120 130 140 150 160 170 170 180 190 200 pF1KE5 SN-GRGLINPQLQGTASNQTVMTTISNGRDPRRAFNR . :. : : . .. . .:::.. ::. .: NP_076 TRITRSQPNHTPAGPPGPSS--NPVSNGKETRRSSKR 180 190 200 210 >>XP_005269206 (OMIM: 612104) PREDICTED: SOSS complex su (211 aa) initn: 773 init1: 700 opt: 718 Z-score: 832.1 bits: 160.9 E(85289): 1.3e-39 Smith-Waterman score: 734; 56.7% identity (76.4% similar) in 208 aa overlap (10-204:6-211) 10 20 30 40 50 60 pF1KE5 MNRVNDPLIFIRDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWD :..::::::::::..::::: :::::::::::::.::::::::::.::::: XP_005 MTTETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWD 10 20 30 40 50 70 80 90 100 110 120 pF1KE5 EIGGLIQPGDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDYR ..:.:::::::::::.::::..::::::::::::.::::::::::::::::::::::.: XP_005 DVGNLIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSEVPNFSEPNPEYS 60 70 80 90 100 110 130 140 150 160 pF1KE5 GQQ--NKGAQSEQKNNSMNSNMGTGTFGPV-----GNGVHTGP-----ESREHQFSHAGR :: ::..:.... .. . . : .. .:. :::. . : : :: XP_005 TQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPSHPPS 120 130 140 150 160 170 170 180 190 200 pF1KE5 SN-GRGLINPQLQGTASNQTVMTTISNGRDPRRAFNR . :. : : . .. . .:::.. ::. .: XP_005 TRITRSQPNHTPAGPPGPSS--NPVSNGKETRRSSKR 180 190 200 210 >>XP_005269204 (OMIM: 612104) PREDICTED: SOSS complex su (227 aa) initn: 773 init1: 700 opt: 718 Z-score: 831.6 bits: 161.0 E(85289): 1.4e-39 Smith-Waterman score: 734; 56.7% identity (76.4% similar) in 208 aa overlap (10-204:22-227) 10 20 30 40 pF1KE5 MNRVNDPLIFIRDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVA :..::::::::::..::::: :::::::::::::.:::: XP_005 MRVPEDLAMGCRGSGSMTTETFVKDIKPGLKNLNLIFIVLETGRVTKTKDGHEVRTCKVA 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE5 DKTGSITISVWDEIGGLIQPGDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSE ::::::.:::::..:.:::::::::::.::::..::::::::::::.::::::::::::: XP_005 DKTGSINISVWDDVGNLIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQKIGEFCMVYSE 70 80 90 100 110 120 110 120 130 140 150 pF1KE5 VPNFSEPNPDYRGQQ--NKGAQSEQKNNSMNSNMGTGTFGPV-----GNGVHTGP----- :::::::::.: :: ::..:.... .. . . : .. .:. :::. . : XP_005 VPNFSEPNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGG 130 140 150 160 170 180 160 170 180 190 200 pF1KE5 ESREHQFSHAGRSN-GRGLINPQLQGTASNQTVMTTISNGRDPRRAFNR : :: . :. : : . .. . .:::.. ::. .: XP_005 PHPPHTPSHPPSTRITRSQPNHTPAGPPGPSS--NPVSNGKETRRSSKR 190 200 210 220 >>XP_005269203 (OMIM: 612104) PREDICTED: SOSS complex su (254 aa) initn: 773 init1: 700 opt: 718 Z-score: 830.9 bits: 161.0 E(85289): 1.5e-39 Smith-Waterman score: 734; 56.7% identity (76.4% similar) in 208 aa overlap (10-204:49-254) 10 20 30 pF1KE5 MNRVNDPLIFIRDIKPGLKNLNVVFIVLEIGRVTKTKDG :..::::::::::..::::: ::::::::: XP_005 APPAGCSAACTVLPAGLVGCRGSGSMTTETFVKDIKPGLKNLNLIFIVLETGRVTKTKDG 20 30 40 50 60 70 40 50 60 70 80 90 pF1KE5 HEVRSCKVADKTGSITISVWDEIGGLIQPGDIIRLTRGYASMWKGCLTLYTGRGGELQKI ::::.::::::::::.:::::..:.:::::::::::.::::..::::::::::::.:::: XP_005 HEVRTCKVADKTGSINISVWDDVGNLIQPGDIIRLTKGYASVFKGCLTLYTGRGGDLQKI 80 90 100 110 120 130 100 110 120 130 140 150 pF1KE5 GEFCMVYSEVPNFSEPNPDYRGQQ--NKGAQSEQKNNSMNSNMGTGTFGPV-----GNGV ::::::::::::::::::.: :: ::..:.... .. . . : .. .:. :::. XP_005 GEFCMVYSEVPNFSEPNPEYSTQQAPNKAVQNDSNPSASQPTTGPSAASPASENQNGNGL 140 150 160 170 180 190 160 170 180 190 200 pF1KE5 HTGP-----ESREHQFSHAGRSN-GRGLINPQLQGTASNQTVMTTISNGRDPRRAFNR . : : :: . :. : : . .. . .:::.. ::. .: XP_005 SAPPGPGGGPHPPHTPSHPPSTRITRSQPNHTPAGPPGPSS--NPVSNGKETRRSSKR 200 210 220 230 240 250 >>XP_016860211 (OMIM: 612103) PREDICTED: SOSS complex su (134 aa) initn: 671 init1: 671 opt: 671 Z-score: 781.2 bits: 150.9 E(85289): 8.9e-37 Smith-Waterman score: 671; 96.2% identity (98.1% similar) in 105 aa overlap (1-105:1-105) 10 20 30 40 50 60 pF1KE5 MNRVNDPLIFIRDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MNRVNDPLIFIRDIKPGLKNLNVVFIVLEIGRVTKTKDGHEVRSCKVADKTGSITISVWD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 EIGGLIQPGDIIRLTRGYASMWKGCLTLYTGRGGELQKIGEFCMVYSEVPNFSEPNPDYR ::::::::::::::::::::::::::::::::::::::::.. : XP_016 EIGGLIQPGDIIRLTRGYASMWKGCLTLYTGRGGELQKIGDLGAVQAAAMRDSIHYYPGN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 GQQNKGAQSEQKNNSMNSNMGTGTFGPVGNGVHTGPESREHQFSHAGRSNGRGLINPQLQ XP_016 DLHPDLEEPSSLGV 130 204 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 07:23:16 2016 done: Tue Nov 8 07:23:17 2016 Total Scan time: 4.270 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]