FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1795, 313 aa 1>>>pF1KE1795 313 - 313 aa - 313 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.9102+/-0.000347; mu= 12.6771+/- 0.022 mean_var=73.9938+/-15.160, 0's: 0 Z-trim(114.2): 82 B-trim: 1232 in 1/54 Lambda= 0.149100 statistics sampled from 23865 (23947) to 23865 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.658), E-opt: 0.2 (0.281), width: 16 Scan time: 7.210 The best scores are: opt bits E(85289) NP_003681 (OMIM: 603424,612067) interferon-inducib ( 313) 2078 456.2 3.9e-128 NP_001132989 (OMIM: 603424,612067) interferon-indu ( 302) 1940 426.5 3.3e-119 NP_001132990 (OMIM: 603424,612067) interferon-indu ( 288) 1912 420.5 2e-117 XP_011510365 (OMIM: 603424,612067) PREDICTED: inte ( 228) 1383 306.6 3e-83 XP_011510368 (OMIM: 603424,612067) PREDICTED: inte ( 200) 1331 295.4 6.2e-80 XP_016860648 (OMIM: 603424,612067) PREDICTED: inte ( 200) 1331 295.4 6.2e-80 NP_001303291 (OMIM: 603424,612067) interferon-indu ( 200) 1331 295.4 6.2e-80 XP_006719644 (OMIM: 605053) PREDICTED: RISC-loadin ( 267) 329 80.0 6.1e-15 XP_005269171 (OMIM: 605053) PREDICTED: RISC-loadin ( 345) 329 80.0 7.6e-15 NP_599151 (OMIM: 605053) RISC-loading complex subu ( 345) 329 80.0 7.6e-15 NP_004169 (OMIM: 605053) RISC-loading complex subu ( 345) 329 80.0 7.6e-15 XP_005269172 (OMIM: 605053) PREDICTED: RISC-loadin ( 345) 329 80.0 7.6e-15 NP_599150 (OMIM: 605053) RISC-loading complex subu ( 366) 329 80.0 8e-15 XP_016875400 (OMIM: 605053) PREDICTED: RISC-loadin ( 222) 323 78.6 1.3e-14 XP_005269179 (OMIM: 605053) PREDICTED: RISC-loadin ( 222) 323 78.6 1.3e-14 XP_011537014 (OMIM: 605053) PREDICTED: RISC-loadin ( 222) 323 78.6 1.3e-14 XP_005269177 (OMIM: 605053) PREDICTED: RISC-loadin ( 222) 323 78.6 1.3e-14 XP_005269174 (OMIM: 605053) PREDICTED: RISC-loadin ( 256) 315 76.9 4.7e-14 XP_016875399 (OMIM: 605053) PREDICTED: RISC-loadin ( 235) 306 75.0 1.7e-13 NP_001157855 (OMIM: 605920) double-stranded RNA-bi ( 398) 254 63.9 6.2e-10 NP_001157857 (OMIM: 605920) double-stranded RNA-bi ( 473) 254 63.9 7.2e-10 NP_001157856 (OMIM: 605920) double-stranded RNA-bi ( 479) 254 63.9 7.3e-10 NP_055208 (OMIM: 605920) double-stranded RNA-bindi ( 479) 254 63.9 7.3e-10 NP_001157854 (OMIM: 605920) double-stranded RNA-bi ( 504) 254 63.9 7.6e-10 NP_001157853 (OMIM: 605920) double-stranded RNA-bi ( 538) 254 63.9 8.1e-10 NP_001157852 (OMIM: 605920) double-stranded RNA-bi ( 570) 254 64.0 8.5e-10 NP_056656 (OMIM: 127400,146920,615010) double-stra (1181) 186 49.5 4.1e-05 NP_059348 (OMIM: 601716) double-stranded RNA-bindi ( 496) 149 41.3 0.0047 NP_004593 (OMIM: 601716) double-stranded RNA-bindi ( 496) 149 41.3 0.0047 NP_059346 (OMIM: 601716) double-stranded RNA-bindi ( 496) 149 41.3 0.0047 XP_005260584 (OMIM: 601716) PREDICTED: double-stra ( 502) 149 41.3 0.0048 NP_001309856 (OMIM: 601716) double-stranded RNA-bi ( 502) 149 41.3 0.0048 NP_001032405 (OMIM: 601716) double-stranded RNA-bi ( 502) 149 41.3 0.0048 NP_001306063 (OMIM: 601716) double-stranded RNA-bi ( 502) 149 41.3 0.0048 XP_016883517 (OMIM: 601716) PREDICTED: double-stra ( 536) 149 41.4 0.0051 NP_001309860 (OMIM: 601716) double-stranded RNA-bi ( 536) 149 41.4 0.0051 NP_001309857 (OMIM: 601716) double-stranded RNA-bi ( 542) 149 41.4 0.0051 XP_011527317 (OMIM: 601716) PREDICTED: double-stra ( 542) 149 41.4 0.0051 NP_059347 (OMIM: 601716) double-stranded RNA-bindi ( 577) 149 41.4 0.0054 NP_001306064 (OMIM: 601716) double-stranded RNA-bi ( 577) 149 41.4 0.0054 NP_001309859 (OMIM: 601716) double-stranded RNA-bi ( 577) 149 41.4 0.0054 NP_001309858 (OMIM: 601716) double-stranded RNA-bi ( 577) 149 41.4 0.0054 NP_001309861 (OMIM: 601716) double-stranded RNA-bi ( 583) 149 41.4 0.0055 XP_006723928 (OMIM: 601716) PREDICTED: double-stra ( 583) 149 41.4 0.0055 NP_001309862 (OMIM: 601716) double-stranded RNA-bi ( 583) 149 41.4 0.0055 >>NP_003681 (OMIM: 603424,612067) interferon-inducible d (313 aa) initn: 2078 init1: 2078 opt: 2078 Z-score: 2421.4 bits: 456.2 E(85289): 3.9e-128 Smith-Waterman score: 2078; 100.0% identity (100.0% similar) in 313 aa overlap (1-313:1-313) 10 20 30 40 50 60 pF1KE1 MSQSRHRAEAPPLEREDSGTFSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MSQSRHRAEAPPLEREDSGTFSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 PKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 PKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 KRNAAEKFLAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 KRNAAEKFLAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTD 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 YIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 YIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAH 250 260 270 280 290 300 310 pF1KE1 NALQYLKIIAERK ::::::::::::: NP_003 NALQYLKIIAERK 310 >>NP_001132989 (OMIM: 603424,612067) interferon-inducibl (302 aa) initn: 1940 init1: 1940 opt: 1940 Z-score: 2261.2 bits: 426.5 E(85289): 3.3e-119 Smith-Waterman score: 1940; 99.3% identity (99.3% similar) in 295 aa overlap (19-313:8-302) 10 20 30 40 50 60 pF1KE1 MSQSRHRAEAPPLEREDSGTFSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQ : ::::::::::::::::::::::::::::::::::::::: NP_001 MQSTPFCGFCSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQ 10 20 30 40 70 80 90 100 110 120 pF1KE1 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQ 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE1 PKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQA 110 120 130 140 150 160 190 200 210 220 230 240 pF1KE1 KRNAAEKFLAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KRNAAEKFLAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTD 170 180 190 200 210 220 250 260 270 280 290 300 pF1KE1 YIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAH 230 240 250 260 270 280 310 pF1KE1 NALQYLKIIAERK ::::::::::::: NP_001 NALQYLKIIAERK 290 300 >>NP_001132990 (OMIM: 603424,612067) interferon-inducibl (288 aa) initn: 1912 init1: 1912 opt: 1912 Z-score: 2229.0 bits: 420.5 E(85289): 2e-117 Smith-Waterman score: 1912; 100.0% identity (100.0% similar) in 288 aa overlap (26-313:1-288) 10 20 30 40 50 60 pF1KE1 MSQSRHRAEAPPLEREDSGTFSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQ ::::::::::::::::::::::::::::::::::: NP_001 MITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQ 10 20 30 70 80 90 100 110 120 pF1KE1 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQ 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE1 PKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQA 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE1 KRNAAEKFLAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KRNAAEKFLAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTD 160 170 180 190 200 210 250 260 270 280 290 300 pF1KE1 YIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAH 220 230 240 250 260 270 310 pF1KE1 NALQYLKIIAERK ::::::::::::: NP_001 NALQYLKIIAERK 280 >>XP_011510365 (OMIM: 603424,612067) PREDICTED: interfer (228 aa) initn: 1383 init1: 1383 opt: 1383 Z-score: 1615.6 bits: 306.6 E(85289): 3e-83 Smith-Waterman score: 1383; 99.0% identity (99.5% similar) in 209 aa overlap (105-313:20-228) 80 90 100 110 120 130 pF1KE1 ITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQEL . :::::::::::::::::::::::::::: XP_011 MQVFGELNFFVFSSSKISWLSFAVPDPLMPDPSKQPKNQLNPIGSLQEL 10 20 30 40 140 150 160 170 180 190 pF1KE1 AIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 AIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSN 50 60 70 80 90 100 200 210 220 230 240 250 pF1KE1 ISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTDYIQLLSEIAKEQGF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTDYIQLLSEIAKEQGF 110 120 130 140 150 160 260 270 280 290 300 310 pF1KE1 NITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 170 180 190 200 210 220 >>XP_011510368 (OMIM: 603424,612067) PREDICTED: interfer (200 aa) initn: 1331 init1: 1331 opt: 1331 Z-score: 1556.1 bits: 295.4 E(85289): 6.2e-80 Smith-Waterman score: 1331; 100.0% identity (100.0% similar) in 200 aa overlap (114-313:1-200) 90 100 110 120 130 140 pF1KE1 KKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLP :::::::::::::::::::::::::::::: XP_011 MPDPSKQPKNQLNPIGSLQELAIHHGWRLP 10 20 30 150 160 170 180 190 200 pF1KE1 EYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISPENHISL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 EYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISPENHISL 40 50 60 70 80 90 210 220 230 240 250 260 pF1KE1 TNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTDYIQLLSEIAKEQGFNITYLDIDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 TNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTDYIQLLSEIAKEQGFNITYLDIDE 100 110 120 130 140 150 270 280 290 300 310 pF1KE1 LSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK :::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 160 170 180 190 200 >>XP_016860648 (OMIM: 603424,612067) PREDICTED: interfer (200 aa) initn: 1331 init1: 1331 opt: 1331 Z-score: 1556.1 bits: 295.4 E(85289): 6.2e-80 Smith-Waterman score: 1331; 100.0% identity (100.0% similar) in 200 aa overlap (114-313:1-200) 90 100 110 120 130 140 pF1KE1 KKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLP :::::::::::::::::::::::::::::: XP_016 MPDPSKQPKNQLNPIGSLQELAIHHGWRLP 10 20 30 150 160 170 180 190 200 pF1KE1 EYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISPENHISL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 EYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISPENHISL 40 50 60 70 80 90 210 220 230 240 250 260 pF1KE1 TNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTDYIQLLSEIAKEQGFNITYLDIDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 TNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTDYIQLLSEIAKEQGFNITYLDIDE 100 110 120 130 140 150 270 280 290 300 310 pF1KE1 LSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK :::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 160 170 180 190 200 >>NP_001303291 (OMIM: 603424,612067) interferon-inducibl (200 aa) initn: 1331 init1: 1331 opt: 1331 Z-score: 1556.1 bits: 295.4 E(85289): 6.2e-80 Smith-Waterman score: 1331; 100.0% identity (100.0% similar) in 200 aa overlap (114-313:1-200) 90 100 110 120 130 140 pF1KE1 KKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQPKNQLNPIGSLQELAIHHGWRLP :::::::::::::::::::::::::::::: NP_001 MPDPSKQPKNQLNPIGSLQELAIHHGWRLP 10 20 30 150 160 170 180 190 200 pF1KE1 EYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISPENHISL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKFSNISPENHISL 40 50 60 70 80 90 210 220 230 240 250 260 pF1KE1 TNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTDYIQLLSEIAKEQGFNITYLDIDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTDYIQLLSEIAKEQGFNITYLDIDE 100 110 120 130 140 150 270 280 290 300 310 pF1KE1 LSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK :::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK 160 170 180 190 200 >>XP_006719644 (OMIM: 605053) PREDICTED: RISC-loading co (267 aa) initn: 658 init1: 320 opt: 329 Z-score: 389.2 bits: 80.0 E(85289): 6.1e-15 Smith-Waterman score: 619; 45.5% identity (68.7% similar) in 246 aa overlap (91-313:28-267) 70 80 90 100 110 120 pF1KE1 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQ :: :: . :. .. :. .: . XP_006 MLEPALEDSSSFSPLDSSLPEDIPVFTAAAAATPV----PSVVLTRSPPMELQPPVS 10 20 30 40 50 130 140 150 160 170 pF1KE1 PK-NQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQ :. .. ::.:.::::....::::::::..::.::::..:.: ::.: :.: :.:.::: XP_006 PQQSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKL 60 70 80 90 100 110 180 190 200 210 220 pF1KE1 AKRNAAEKFLAKF----------SNISPEN-HISLTNVVGHSL--------GCTWHSLRN :::::: :.: . ... :.. :.:. :: : :::: :::: XP_006 AKRNAAAKMLLRVHTVPLDARDGNEVEPDDDHFSIG--VGSRLDGLRNRGPGCTWDSLRN 120 130 140 150 160 170 230 240 250 260 270 pF1KE1 SPGEKINLLKR-SLLSIPNTDYI--QLLSEIAKEQGFNITYLDIDELSANGQYQCLAELS : :::: :. :: :. ..:::...::.:...::::.::: .: :::.::: XP_006 SVGEKILSLRSCSLGSLGALGPACCRVLSELSEEQAFHVSYLDIEELSLSGLCQCLVELS 180 190 200 210 220 230 280 290 300 310 pF1KE1 TSPITVCHGSGISCGNAQSDAAHNALQYLKIIAERK :.: ::::::. . :...::. :::::::.: : XP_006 TQPATVCHGSATTREAARGEAARRALQYLKIMAGSK 240 250 260 >>XP_005269171 (OMIM: 605053) PREDICTED: RISC-loading co (345 aa) initn: 925 init1: 320 opt: 329 Z-score: 387.5 bits: 80.0 E(85289): 7.6e-15 Smith-Waterman score: 839; 44.6% identity (67.8% similar) in 345 aa overlap (26-313:1-345) 10 20 30 40 50 60 pF1KE1 MSQSRHRAEAPPLEREDSGTFSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQ :..:.::::::..:.::: . . :::. ... : XP_005 MLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQ 10 20 30 70 80 90 100 110 pF1KE1 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPD-----PL-- : :.::::::::: .:::.: ::: :::.:::.:.. ::... . :. : :: XP_005 AHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDS 40 50 60 70 80 90 120 130 140 pF1KE1 -MPD--------------PS----KQPKNQL-----------NPIGSLQELAIHHGWRLP .:. :: ..: .: ::.:.::::....::::: XP_005 SLPEDIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLP 100 110 120 130 140 150 150 160 170 180 190 pF1KE1 EYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKF----------S :::..::.::::..:.: ::.: :.: :.:.::: :::::: :.: . . XP_005 EYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGN 160 170 180 190 200 210 200 210 220 230 240 pF1KE1 NISPEN-HIS------LTNVVGHSLGCTWHSLRNSPGEKINLLKR-SLLSIPNTDYI--Q .. :.. :.: : .. ... :::: ::::: :::: :. :: :. . XP_005 EVEPDDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCR 220 230 240 250 260 270 250 260 270 280 290 300 pF1KE1 LLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNAL .:::...::.:...::::.::: .: :::.::::.: ::::::. . :...::. :: XP_005 VLSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRAL 280 290 300 310 320 330 310 pF1KE1 QYLKIIAERK :::::.: : XP_005 QYLKIMAGSK 340 >>NP_599151 (OMIM: 605053) RISC-loading complex subunit (345 aa) initn: 925 init1: 320 opt: 329 Z-score: 387.5 bits: 80.0 E(85289): 7.6e-15 Smith-Waterman score: 839; 44.6% identity (67.8% similar) in 345 aa overlap (26-313:1-345) 10 20 30 40 50 60 pF1KE1 MSQSRHRAEAPPLEREDSGTFSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQ :..:.::::::..:.::: . . :::. ... : NP_599 MLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQ 10 20 30 70 80 90 100 110 pF1KE1 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPD-----PL-- : :.::::::::: .:::.: ::: :::.:::.:.. ::... . :. : :: NP_599 AHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDS 40 50 60 70 80 90 120 130 140 pF1KE1 -MPD--------------PS----KQPKNQL-----------NPIGSLQELAIHHGWRLP .:. :: ..: .: ::.:.::::....::::: NP_599 SLPEDIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLP 100 110 120 130 140 150 150 160 170 180 190 pF1KE1 EYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKF----------S :::..::.::::..:.: ::.: :.: :.:.::: :::::: :.: . . NP_599 EYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGN 160 170 180 190 200 210 200 210 220 230 240 pF1KE1 NISPEN-HIS------LTNVVGHSLGCTWHSLRNSPGEKINLLKR-SLLSIPNTDYI--Q .. :.. :.: : .. ... :::: ::::: :::: :. :: :. . NP_599 EVEPDDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCR 220 230 240 250 260 270 250 260 270 280 290 300 pF1KE1 LLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNAL .:::...::.:...::::.::: .: :::.::::.: ::::::. . :...::. :: NP_599 VLSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRAL 280 290 300 310 320 330 310 pF1KE1 QYLKIIAERK :::::.: : NP_599 QYLKIMAGSK 340 313 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 18:11:16 2016 done: Sun Nov 6 18:11:17 2016 Total Scan time: 7.210 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]