FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1795, 313 aa 1>>>pF1KE1795 313 - 313 aa - 313 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.0681+/-0.000832; mu= 11.5602+/- 0.050 mean_var=69.6918+/-14.066, 0's: 0 Z-trim(106.7): 30 B-trim: 0 in 0/51 Lambda= 0.153633 statistics sampled from 9123 (9146) to 9123 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.281), width: 16 Scan time: 2.550 The best scores are: opt bits E(32554) CCDS2279.1 PRKRA gene_id:8575|Hs108|chr2 ( 313) 2078 469.5 1.4e-132 CCDS46460.1 PRKRA gene_id:8575|Hs108|chr2 ( 302) 1940 438.9 2.3e-123 CCDS46461.1 PRKRA gene_id:8575|Hs108|chr2 ( 288) 1912 432.7 1.6e-121 CCDS41791.1 TARBP2 gene_id:6895|Hs108|chr12 ( 345) 329 81.9 7.9e-16 CCDS8861.1 TARBP2 gene_id:6895|Hs108|chr12 ( 366) 329 81.9 8.3e-16 CCDS55244.1 STAU2 gene_id:27067|Hs108|chr8 ( 398) 254 65.3 9.1e-11 >>CCDS2279.1 PRKRA gene_id:8575|Hs108|chr2 (313 aa) initn: 2078 init1: 2078 opt: 2078 Z-score: 2493.5 bits: 469.5 E(32554): 1.4e-132 Smith-Waterman score: 2078; 100.0% identity (100.0% similar) in 313 aa overlap (1-313:1-313) 10 20 30 40 50 60 pF1KE1 MSQSRHRAEAPPLEREDSGTFSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 MSQSRHRAEAPPLEREDSGTFSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 PKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 PKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 KRNAAEKFLAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 KRNAAEKFLAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTD 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 YIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 YIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAH 250 260 270 280 290 300 310 pF1KE1 NALQYLKIIAERK ::::::::::::: CCDS22 NALQYLKIIAERK 310 >>CCDS46460.1 PRKRA gene_id:8575|Hs108|chr2 (302 aa) initn: 1940 init1: 1940 opt: 1940 Z-score: 2328.4 bits: 438.9 E(32554): 2.3e-123 Smith-Waterman score: 1940; 99.3% identity (99.3% similar) in 295 aa overlap (19-313:8-302) 10 20 30 40 50 60 pF1KE1 MSQSRHRAEAPPLEREDSGTFSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQ : ::::::::::::::::::::::::::::::::::::::: CCDS46 MQSTPFCGFCSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQ 10 20 30 40 70 80 90 100 110 120 pF1KE1 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQ 50 60 70 80 90 100 130 140 150 160 170 180 pF1KE1 PKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 PKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQA 110 120 130 140 150 160 190 200 210 220 230 240 pF1KE1 KRNAAEKFLAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 KRNAAEKFLAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTD 170 180 190 200 210 220 250 260 270 280 290 300 pF1KE1 YIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 YIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAH 230 240 250 260 270 280 310 pF1KE1 NALQYLKIIAERK ::::::::::::: CCDS46 NALQYLKIIAERK 290 300 >>CCDS46461.1 PRKRA gene_id:8575|Hs108|chr2 (288 aa) initn: 1912 init1: 1912 opt: 1912 Z-score: 2295.2 bits: 432.7 E(32554): 1.6e-121 Smith-Waterman score: 1912; 100.0% identity (100.0% similar) in 288 aa overlap (26-313:1-288) 10 20 30 40 50 60 pF1KE1 MSQSRHRAEAPPLEREDSGTFSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQ ::::::::::::::::::::::::::::::::::: CCDS46 MITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQ 10 20 30 70 80 90 100 110 120 pF1KE1 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPSKQ 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE1 PKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 PKNQLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQA 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE1 KRNAAEKFLAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 KRNAAEKFLAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKINLLKRSLLSIPNTD 160 170 180 190 200 210 250 260 270 280 290 300 pF1KE1 YIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS46 YIQLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAH 220 230 240 250 260 270 310 pF1KE1 NALQYLKIIAERK ::::::::::::: CCDS46 NALQYLKIIAERK 280 >>CCDS41791.1 TARBP2 gene_id:6895|Hs108|chr12 (345 aa) initn: 925 init1: 320 opt: 329 Z-score: 397.7 bits: 81.9 E(32554): 7.9e-16 Smith-Waterman score: 839; 44.6% identity (67.8% similar) in 345 aa overlap (26-313:1-345) 10 20 30 40 50 60 pF1KE1 MSQSRHRAEAPPLEREDSGTFSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQ :..:.::::::..:.::: . . :::. ... : CCDS41 MLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQ 10 20 30 70 80 90 100 110 pF1KE1 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPD-----PL-- : :.::::::::: .:::.: ::: :::.:::.:.. ::... . :. : :: CCDS41 AHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDS 40 50 60 70 80 90 120 130 140 pF1KE1 -MPD--------------PS----KQPKNQL-----------NPIGSLQELAIHHGWRLP .:. :: ..: .: ::.:.::::....::::: CCDS41 SLPEDIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLP 100 110 120 130 140 150 150 160 170 180 190 pF1KE1 EYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKF----------S :::..::.::::..:.: ::.: :.: :.:.::: :::::: :.: . . CCDS41 EYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGN 160 170 180 190 200 210 200 210 220 230 240 pF1KE1 NISPEN-HIS------LTNVVGHSLGCTWHSLRNSPGEKINLLKR-SLLSIPNTDYI--Q .. :.. :.: : .. ... :::: ::::: :::: :. :: :. . CCDS41 EVEPDDDHFSIGVGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPACCR 220 230 240 250 260 270 250 260 270 280 290 300 pF1KE1 LLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHNAL .:::...::.:...::::.::: .: :::.::::.: ::::::. . :...::. :: CCDS41 VLSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARRAL 280 290 300 310 320 330 310 pF1KE1 QYLKIIAERK :::::.: : CCDS41 QYLKIMAGSK 340 >>CCDS8861.1 TARBP2 gene_id:6895|Hs108|chr12 (366 aa) initn: 931 init1: 320 opt: 329 Z-score: 397.2 bits: 81.9 E(32554): 8.3e-16 Smith-Waterman score: 848; 44.6% identity (66.7% similar) in 354 aa overlap (19-313:15-366) 10 20 30 40 50 60 pF1KE1 MSQSRHRAEAPPLEREDSGTFSLGKMITAKPGKTPIQVLHEYGMKTKNIPVYECERSDVQ : :. .:..:.::::::..:.::: . . :::. ... : CCDS88 MSEEEQGSGTTTGCGLPSIEQMLAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQ 10 20 30 40 50 70 80 90 100 110 pF1KE1 IHVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPD-----PL-- : :.::::::::: .:::.: ::: :::.:::.:.. ::... . :. : :: CCDS88 AHQPNFTFRVTVGDTSCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSPLDS 60 70 80 90 100 110 120 130 140 pF1KE1 -MPD--------------PS----KQPKNQL-----------NPIGSLQELAIHHGWRLP .:. :: ..: .: ::.:.::::....::::: CCDS88 SLPEDIPVFTAAAAATPVPSVVLTRSPPMELQPPVSPQQSECNPVGALQELVVQKGWRLP 120 130 140 150 160 170 150 160 170 180 190 pF1KE1 EYTLSQEGGPAHKREYTTICRLESFMETGKGASKKQAKRNAAEKFLAKF----------S :::..::.::::..:.: ::.: :.: :.:.::: :::::: :.: . . CCDS88 EYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGN 180 190 200 210 220 230 200 210 220 230 240 pF1KE1 NISPEN-HISLTNVVGHSL--------GCTWHSLRNSPGEKINLLKR-SLLSIPNTDYI- .. :.. :.:. :: : :::: ::::: :::: :. :: :. CCDS88 EVEPDDDHFSIG--VGSRLDGLRNRGPGCTWDSLRNSVGEKILSLRSCSLGSLGALGPAC 240 250 260 270 280 290 250 260 270 280 290 300 pF1KE1 -QLLSEIAKEQGFNITYLDIDELSANGQYQCLAELSTSPITVCHGSGISCGNAQSDAAHN ..:::...::.:...::::.::: .: :::.::::.: ::::::. . :...::. CCDS88 CRVLSELSEEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCHGSATTREAARGEAARR 300 310 320 330 340 350 310 pF1KE1 ALQYLKIIAERK :::::::.: : CCDS88 ALQYLKIMAGSK 360 >>CCDS55244.1 STAU2 gene_id:27067|Hs108|chr8 (398 aa) initn: 247 init1: 138 opt: 254 Z-score: 306.8 bits: 65.3 E(32554): 9.1e-11 Smith-Waterman score: 278; 26.7% identity (58.5% similar) in 270 aa overlap (33-283:34-292) 10 20 30 40 50 60 pF1KE1 QSRHRAEAPPLEREDSGTFSLGKMITAKPGKTPIQVLHEYGMKTKNIPV-YECERSDVQI :. :... : ..: .:.:: .: . . CCDS55 LQALQNEPIPERSPQNGESGKDVDDDKDANKSEISLVFEIALK-RNMPVSFEVIKESGPP 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 HVPTFTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANASICFAVPDPLMPDPS--- :. .:. ::.::... :::.::::.:.::: .... :: : :.. :. CCDS55 HMKSFVTRVSVGEFSAEGEGNSKKLSKKRAATTVLQELKKLP------PLPVVEKPKLFF 70 80 90 100 110 120 130 140 150 160 pF1KE1 -KQPKN----------QLNPIGSLQELAIHHGWRLPEYTLSQEGGPAHKREYTTICRLES :.::. .:::. : .. . . :.:.: .: : ..::.. .. . CCDS55 KKRPKTIVKAGPEYGQGMNPISRLAQIQQAKKEKEPDYVLLSERGMPRRREFVMQVKVGN 120 130 140 150 160 170 170 180 190 200 210 220 pF1KE1 FMETGKGASKKQAKRNAAEKFLAKFSNISPENHISLTNVVGHSLGCTWHSLRNSPGEKIN . :: : .:: ::.:::: .: ... . : . . .:.. : : . . . : : CCDS55 EVATGTGPNKKIAKKNAAEAMLLQLGYKASTNLQDQLEKTGENKG--WSGPKPGFPEPTN 180 190 200 210 220 230 230 240 250 260 270 280 pF1KE1 LLKRSLLSIPNTDYIQLLSEIAKEQ---GFNITYLDIDELSA-NGQYQCLAELSTSPITV ...: . . : : . : .... : .. ::. ... .... .. :.: :. CCDS55 NTPKGILHL-SPDVYQEM-EASRHKVISGTTLGYLSPKDMNQPSSSFFSISPTSNSSATI 240 250 260 270 280 290 290 300 310 pF1KE1 CHGSGISCGNAQSDAAHNALQYLKIIAERK CCDS55 ARELLMNGTSSTAEAIGLKGSSPTPPCSPVQPSKQLEYLARIQGFQAALSALKQFSEQGL 300 310 320 330 340 350 313 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 18:11:15 2016 done: Sun Nov 6 18:11:16 2016 Total Scan time: 2.550 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]